Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   5.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 112 YKRHYKVPTRPGLNKAQLADAVQKHFKSL 140
           Y   YK+  +P  N  Q+AD V    K +
Sbjct: 428 YSGPYKIIAKPHPNTYQIADPVTNEIKGV 456


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 22 LVDDGDRCRRPAGNASYSKRIQK 44
          L+DDG R R  A    + K++++
Sbjct: 22 LLDDGTRTRNKAAECVFGKQVRE 44


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 144 EREIMTYFIYMVKTNGNK 161
           ++++M YFI MVK    K
Sbjct: 61  DQKVMDYFIKMVKQKHKK 78


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,064
Number of Sequences: 317
Number of extensions: 1394
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)