Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001025-TA|BGIBMGA001025-PA|undefined
         (174 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009829-1|AAH09829.1|  183|Homo sapiens SAP30-like protein.          198   6e-51
AY846876-1|AAX54477.1|  183|Homo sapiens NS4ATP2 protein.             198   6e-51
AY341060-1|AAQ16562.1|  183|Homo sapiens Sin3A associated protei...   198   6e-51
AK021588-1|BAB13848.1|  183|Homo sapiens protein ( Homo sapiens ...   198   6e-51
BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protei...   182   8e-46
AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated polyp...   182   8e-46

>BC009829-1|AAH09829.1|  183|Homo sapiens SAP30-like protein.
          Length = 183

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/176 (55%), Positives = 123/176 (69%), Gaps = 13/176 (7%)

Query: 3   NGFSTGEEDSRGNSD-----------QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRL 51
           NGFST EEDSR               Q CCL++DG+RC RPAGNAS+SKR+QK+++ ++L
Sbjct: 2   NGFST-EEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query: 52  KLNIDGQARHTYICDYHKTMIQCARTKQRR-TKXXXXXXXXXXXXXXXVDWFQLQVNTLR 110
           KL+ID   RH YICD+HK  IQ  R K++R T                VD FQLQVNTLR
Sbjct: 61  KLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLR 120

Query: 111 RYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKN 166
           RYKRHYK+ TRPG NKAQLA+ V +HF+++PVNE+E + YFIYMVK+N ++LDQK+
Sbjct: 121 RYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176


>AY846876-1|AAX54477.1|  183|Homo sapiens NS4ATP2 protein.
          Length = 183

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/176 (55%), Positives = 123/176 (69%), Gaps = 13/176 (7%)

Query: 3   NGFSTGEEDSRGNSD-----------QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRL 51
           NGFST EEDSR               Q CCL++DG+RC RPAGNAS+SKR+QK+++ ++L
Sbjct: 2   NGFST-EEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query: 52  KLNIDGQARHTYICDYHKTMIQCARTKQRR-TKXXXXXXXXXXXXXXXVDWFQLQVNTLR 110
           KL+ID   RH YICD+HK  IQ  R K++R T                VD FQLQVNTLR
Sbjct: 61  KLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLR 120

Query: 111 RYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKN 166
           RYKRHYK+ TRPG NKAQLA+ V +HF+++PVNE+E + YFIYMVK+N ++LDQK+
Sbjct: 121 RYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176


>AY341060-1|AAQ16562.1|  183|Homo sapiens Sin3A associated protein
           p30-like protein.
          Length = 183

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/176 (55%), Positives = 123/176 (69%), Gaps = 13/176 (7%)

Query: 3   NGFSTGEEDSRGNSD-----------QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRL 51
           NGFST EEDSR               Q CCL++DG+RC RPAGNAS+SKR+QK+++ ++L
Sbjct: 2   NGFST-EEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query: 52  KLNIDGQARHTYICDYHKTMIQCARTKQRR-TKXXXXXXXXXXXXXXXVDWFQLQVNTLR 110
           KL+ID   RH YICD+HK  IQ  R K++R T                VD FQLQVNTLR
Sbjct: 61  KLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLR 120

Query: 111 RYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKN 166
           RYKRHYK+ TRPG NKAQLA+ V +HF+++PVNE+E + YFIYMVK+N ++LDQK+
Sbjct: 121 RYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176


>AK021588-1|BAB13848.1|  183|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11526 fis, clone HEMBA1002555, weakly similar to
           Homo sapiens mSin3A associated polypeptide p30 mRNA. ).
          Length = 183

 Score =  198 bits (484), Expect = 6e-51
 Identities = 97/176 (55%), Positives = 123/176 (69%), Gaps = 13/176 (7%)

Query: 3   NGFSTGEEDSRGNSD-----------QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRL 51
           NGFST EEDSR               Q CCL++DG+RC RPAGNAS+SKR+QK+++ ++L
Sbjct: 2   NGFST-EEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60

Query: 52  KLNIDGQARHTYICDYHKTMIQCARTKQRR-TKXXXXXXXXXXXXXXXVDWFQLQVNTLR 110
           KL+ID   RH YICD+HK  IQ  R K++R T                VD FQLQVNTLR
Sbjct: 61  KLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLR 120

Query: 111 RYKRHYKVPTRPGLNKAQLADAVQKHFKSLPVNEREIMTYFIYMVKTNGNKLDQKN 166
           RYKRHYK+ TRPG NKAQLA+ V +HF+++PVNE+E + YFIYMVK+N ++LDQK+
Sbjct: 121 RYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176


>BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protein,
           30kDa protein.
          Length = 220

 Score =  182 bits (442), Expect = 8e-46
 Identities = 82/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 18  QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQARHTYICDYHKTMIQCART 77
           Q+CCL +DG+RC R AGNAS+SKRIQK+++ +++K+ +D  ARH YICDYHK +IQ  R 
Sbjct: 65  QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRN 124

Query: 78  KQRR--TKXXXXXXXXXXXXXXXVDWFQLQVNTLRRYKRHYKVPTRPGLNKAQLADAVQK 135
           +++R  +                VD +QLQVNTLRRYKRH+K+PTRPGLNKAQL + V  
Sbjct: 125 RRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC 184

Query: 136 HFKSLPVNEREIMTYFIYMVKTNGNKLDQK 165
           HF+S+PVNE++ +TYFIY VK + NK D K
Sbjct: 185 HFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214


>AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated
           polypeptide p30 protein.
          Length = 220

 Score =  182 bits (442), Expect = 8e-46
 Identities = 82/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 18  QICCLVDDGDRCRRPAGNASYSKRIQKTVALRRLKLNIDGQARHTYICDYHKTMIQCART 77
           Q+CCL +DG+RC R AGNAS+SKRIQK+++ +++K+ +D  ARH YICDYHK +IQ  R 
Sbjct: 65  QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRN 124

Query: 78  KQRR--TKXXXXXXXXXXXXXXXVDWFQLQVNTLRRYKRHYKVPTRPGLNKAQLADAVQK 135
           +++R  +                VD +QLQVNTLRRYKRH+K+PTRPGLNKAQL + V  
Sbjct: 125 RRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC 184

Query: 136 HFKSLPVNEREIMTYFIYMVKTNGNKLDQK 165
           HF+S+PVNE++ +TYFIY VK + NK D K
Sbjct: 185 HFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,761,697
Number of Sequences: 224733
Number of extensions: 722641
Number of successful extensions: 1344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 6
length of query: 174
length of database: 73,234,838
effective HSP length: 85
effective length of query: 89
effective length of database: 54,132,533
effective search space: 4817795437
effective search space used: 4817795437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)