Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001024-TA|BGIBMGA001024-PA|IPR013026|Tetratricopeptide
region, IPR008940|Protein prenyltransferase, IPR013618|Domain of
unknown function DUF1736, IPR001440|Tetratricopeptide TPR_1,
IPR013105|Tetratricopeptide TPR_2
         (744 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   2.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 706 NTSVPSKSEPPAPTATTEVRARWNYIPQQ 734
           NTS  S +  P+ TA   +R   NYI  Q
Sbjct: 164 NTSTSSSASSPSVTAAPHLRDSPNYIKPQ 192


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,246
Number of Sequences: 317
Number of extensions: 5283
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 1
length of query: 744
length of database: 114,650
effective HSP length: 62
effective length of query: 682
effective length of database: 94,996
effective search space: 64787272
effective search space used: 64787272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)