Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    28   2.1  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    28   2.1  
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    27   3.7  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    27   3.7  
At5g67400.1 68418.m08499 peroxidase 73 (PER73) (P73) (PRXR11) id...    26   8.4  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    26   8.4  

>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 42   YLGNPCPESEDVCVKLIERKGAQE-VITRDCLSNFRAFRTDIPADT 86
            ++G   P SE+V +KL+++ G  E +I +D +    A + D+  DT
Sbjct: 1406 FMGLATPHSEEV-IKLVDKVGGFEWLIQKDEMDGATAVKLDLSLDT 1450


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 42   YLGNPCPESEDVCVKLIERKGAQE-VITRDCLSNFRAFRTDIPADT 86
            ++G   P SE+V +KL+++ G  E +I +D +    A + D+  DT
Sbjct: 1406 FMGLATPHSEEV-IKLVDKVGGFEWLIQKDEMDGATAVKLDLSLDT 1450


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 11/31 (35%)

Query: 24  CTAATPGCNEPFNWRGMGYLGNPCPESEDVC 54
           C A    CN    W       NPCPE    C
Sbjct: 460 CRANCKICNSKVGWNSASTTLNPCPEKTRWC 490


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase GI:3522867 from
           [Homo sapiens]
          Length = 1019

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 69  RDCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHYVNNSIKEIDV 112
           RD +   R FRTD     Y+        LNL  Y+ +   E+ V
Sbjct: 740 RDFIKRIRDFRTDWDLQVYQPVAGNYYPLNLGIYMQDKTSELSV 783


>At5g67400.1 68418.m08499 peroxidase 73 (PER73) (P73) (PRXR11)
          identical to SP|Q43873 Peroxidase 73 precursor (EC
          1.11.1.7) (Atperox P73) (PRXR11) (ATP10a) {Arabidopsis
          thaliana}
          Length = 329

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 42 YLGNPCPESEDVCVKLIERKGAQEVIT 68
          + GN CP  E +  K+++ K  Q  +T
Sbjct: 31 FYGNSCPNVEQIVKKVVQEKIKQTFVT 57


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)

Query: 19  TWCYQCTAATPGCNEPFNWRGMGYLGNPC 47
           T CY C +  PG  +   W    +LG+ C
Sbjct: 261 TKCYSCESTVPGNGQSLRW----FLGHTC 285


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,377
Number of Sequences: 28952
Number of extensions: 124207
Number of successful extensions: 217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)