Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000996-TA|BGIBMGA000996-PA|undefined
         (127 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.51 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.51 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   4.8  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
          protein.
          Length = 237

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 35 ELGSCGDPLPFNISDPE 51
          EL +CG+ L F+ SDP+
Sbjct: 50 ELKTCGNGLAFDASDPK 66


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
          protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 0.51
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 35 ELGSCGDPLPFNISDPE 51
          EL +CG+ L F+ SDP+
Sbjct: 50 ELKTCGNGLAFDASDPK 66


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/26 (23%), Positives = 16/26 (61%)

Query: 85  VTERSCLQQPPSDYEERCAYTMWKYK 110
           +T ++ + +PP + E+R     ++Y+
Sbjct: 259 LTNKNLVSKPPHEVEKRAQDGQYEYR 284


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,840
Number of Sequences: 317
Number of extensions: 1280
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 127
length of database: 114,650
effective HSP length: 50
effective length of query: 77
effective length of database: 98,800
effective search space:  7607600
effective search space used:  7607600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)