Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000996-TA|BGIBMGA000996-PA|undefined
         (127 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_7886| Best HMM Match : Cbl_N3 (HMM E-Value=4.9)                     27   4.7  
SB_49323| Best HMM Match : Cadherin (HMM E-Value=9.4)                  27   6.2  
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 55  GVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEERCAYTMWKYK---- 110
           G  +T C S WC     G+    +  + G  +     Q+   D + RC   +   K    
Sbjct: 261 GACVTDCKSRWCGVTCTGSGCDVKCPNNGTESCDQTCQKSAGDCKMRCDAKVCTSKCTDG 320

Query: 111 RVYVCFCNGDLCIQ 124
           R     C GD C Q
Sbjct: 321 RCQAISCGGDRCTQ 334


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 19  EISCLSRRCI--QCRSRGELGSCGDPLPFNISDPEAEHGVHITACPSGWCAKRIQGTTGT 76
           + +C + +C+    R  GE   CGD    +   P      +   C  G C       T T
Sbjct: 347 DFTCANSQCVPNSFRCDGE-NDCGDRSDESGCKPTTTCSANEFRCDDGRCI------TST 399

Query: 77  FRTDDYGAVTERS----CLQQPPSDYEERCAYT 105
           FR D     T+RS    C+ +  + YE  CA++
Sbjct: 400 FRCDREFDCTDRSDERGCVNKTCAPYEFTCAFS 432


>SB_7886| Best HMM Match : Cbl_N3 (HMM E-Value=4.9)
          Length = 667

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 72  GTTGTFRTDDYGAVTERSCLQQPPSDYEERCAYT-MWKYK 110
           G TG   T D G + ER+ L +PP + +    Y   W Y+
Sbjct: 394 GYTGHQGTKDIGTLYERTWLYRPPREQDIGMLYNGTWLYR 433


>SB_49323| Best HMM Match : Cadherin (HMM E-Value=9.4)
          Length = 109

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 24 SRRCIQCRSRGELGSCGDPLPFNISD 49
          S RCI C    + GSC + + FNI D
Sbjct: 38 SHRCIVCDLTSD-GSCDESVDFNIDD 62


>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 48  SDPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQ 93
           S   +  G     CP     K+   TTG+ R+DD+G   +   +Q+
Sbjct: 952 SHVSSRSGKRPITCPPRDAKKQSTCTTGSSRSDDFGFTIDERDIQE 997


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 11  LAISYLKVEISCLSRRCIQCRSRGELGSCGDPLPFNISDPEAEHGVHITA-CPSG 64
           L  S++   I   +     CR     G C + +   I+DP +   VH+T+  PSG
Sbjct: 629 LVTSHVMHNIQGCNAERYSCRMSNVAGQCEESITLTINDPAS---VHVTSTTPSG 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,944,809
Number of Sequences: 59808
Number of extensions: 201347
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 16,821,457
effective HSP length: 74
effective length of query: 53
effective length of database: 12,395,665
effective search space: 656970245
effective search space used: 656970245
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)