Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000989-TA|BGIBMGA000989-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51840.1 68418.m06427 expressed protein                             33   0.46 
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom...    31   1.9  
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    31   3.2  
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put...    29   7.5  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    29   7.5  
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3...    29   9.9  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    29   9.9  

>At5g51840.1 68418.m06427 expressed protein
          Length = 245

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 292 YTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPPNSNEIEQKKKKAVV 351
           YT   ++E   +L+ + ++  +TK+R + R   GN    L +T+ P    +E  +KK  V
Sbjct: 26  YTEKIIEEEQVQLRKY-IEENYTKIRDVEREF-GNLSMELKLTAGPKKAAMEHLRKKIEV 83

Query: 352 ITARVHPGETPSSWMMKGF 370
            T R+H  +       K F
Sbjct: 84  STERIHAAKLKEEEARKAF 102


>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 916

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 216 LSKAESLYNEGMRPLLYSTKDAQLHSIGWRRCGDNIAYFKNDPQNEEEEQFPSYTLTFNL 275
           LSK   L  E MR L++      L++  W RC + +  F N P   E+E+ P  T +  L
Sbjct: 490 LSKLWVLKPE-MRELIWKGACIALNAEKWLRCLEEVCTFHNLPLVTEDEKLPVGTGSNPL 548

Query: 276 EF 277
           EF
Sbjct: 549 EF 550


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 93  SPATPEPYYSPSGKELNPQPVGEEAGTVTFQYYPMSAVNYFSR--STVGGSRLYLSACAS 150
           SPA P P  S  G  + PQPVG       +  Y   A   F R   T+    L     A 
Sbjct: 41  SPAVPAPVASIPGATVYPQPVGPVPAVYAYPQY-QQAHQLFQRDAQTITPEALENVKAAL 99

Query: 151 AGGDDELKFESR 162
           A  + E K E++
Sbjct: 100 ASSETEHKAETK 111


>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 882

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 279 HTDDAVYIAHCYPYTYS-DLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
           + D+  ++A  Y +  + DL+++LS     P+ +  T+LR+      G    ++  T P 
Sbjct: 642 YCDEGDHLALIYEFVPNGDLRQHLSGKGGKPIVNWGTRLRIAAEAALGLEYLHIGCTPPM 701

Query: 338 NSNEIE---------QKKKKAVVITARVHP--GETPSSWMMKGFMDYLTGDSNQARELRE 386
              +++          K K A    +R  P  GE+  S ++ G   YL  D    +    
Sbjct: 702 VHRDVKTTNILLDEHYKAKLADFGLSRSFPVGGESHVSTVIAGTPGYLDPDRLSEKSDVY 761

Query: 387 KFIFKLVPMLNPDGVIVGNNRCS 409
            F   L+ M+    VI  N R S
Sbjct: 762 SFGIVLLEMITNQAVIDRNRRKS 784


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin-like protein
           my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 342 IEQKKKKAVVITARVHPGETPSSWMMKGFMDYLTGDSNQARELREKFIFKLVPMLNPDG- 400
           I + K  +++++     G+T ++ M+  ++ YL G S       E+ + +  P+L   G 
Sbjct: 158 INEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGN 217

Query: 401 -VIVGNNRCSLTGKDLNRQY 419
              + NN  S  GK +  Q+
Sbjct: 218 AKTLRNNNSSRFGKFVELQF 237


>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
           contains Pfam profile: Myb DNA-binding proteins;
           identical to cDNA putative c-myb-like transcription
           factor (MYB3R3) GI:15375285
          Length = 505

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 101 YSPSGKELNPQPVGEEAGTVTFQY--YPMSAVNYFSRSTVGGSRLYLSACASAGGDDELK 158
           Y+ S +  NP+P+ E  G     Y  Y    ++Y+  S V   R+Y + C  +     + 
Sbjct: 311 YARSPQLPNPEPLPENGGAANNGYHLYYTPQIDYYRASEVDTQRMYGNECGCSPSASPVS 370

Query: 159 F 159
           F
Sbjct: 371 F 371


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 342 IEQKKKKAVVITARVHPGETPSSWMMKGFMDYLTGDSNQARELREKFIFKLVPMLNPDG- 400
           I +   +A++++     G+T S+ M+  ++ Y+ G +       E+ + +  P+L   G 
Sbjct: 160 INEGVSQAILVSGESGAGKTESTKMLMQYLAYMGGKAESEGRSVEQQVLESNPVLEAFGN 219

Query: 401 -VIVGNNRCSLTGKDLNRQY 419
              V NN  S  GK +  Q+
Sbjct: 220 AKTVRNNNSSRFGKFVEIQF 239


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,317,441
Number of Sequences: 28952
Number of extensions: 725866
Number of successful extensions: 1772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 7
length of query: 666
length of database: 12,070,560
effective HSP length: 86
effective length of query: 580
effective length of database: 9,580,688
effective search space: 5556799040
effective search space used: 5556799040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)