Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
(261 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88... 31 0.59
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 30 1.4
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 30 1.4
At1g63420.1 68414.m07172 expressed protein 30 1.4
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 29 2.4
At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive eff... 29 2.4
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 29 3.1
At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS... 28 7.3
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 27 9.6
At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2 (HS... 27 9.6
At3g44940.1 68416.m04842 expressed protein 27 9.6
>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
Cyclin K (Fragment) {Mus musculus}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 474
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 65 TESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECL 124
+E+ L+D N+ + DD+G+V + + + E + K +K +K +KD TK + +
Sbjct: 349 SEAQKNLQDHSVGNIMVEKSDDVGVVQLKKDLQLHQEEVESKQEKDKKSFEKDITKIDLM 408
Query: 125 ELLNLALHYAEE 136
+ +L E+
Sbjct: 409 DEKDLTESEVED 420
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 133 YAEEGKGILWLAEKFFLASIAVGSQYLVDGGRQKGCC 169
Y + +G +W ++FF S+ S YL D G CC
Sbjct: 129 YTLKYRGSMWGYKRFFKRSLLESSDYLKDNGLLVRCC 165
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 133 YAEEGKGILWLAEKFFLASIAVGSQYLVDGGRQKGCC 169
Y + +G +W ++FF S+ S YL D G CC
Sbjct: 129 YTLKYRGSMWGYKRFFKRSLLESSDYLKDNGLLVRCC 165
>At1g63420.1 68414.m07172 expressed protein
Length = 578
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 98 DYLEHICDKLQKAEKYRDKDDTKKECLELLNLALHYAEEGKGILWLAEKFFLASI 152
DY+ H+ ++ K KY K K +EL AL EG+ + + +KF + S+
Sbjct: 479 DYMFHLLNEYSKLLKY--KPQVPKNSVELCTEALVCPSEGEDVNGVDKKFMIGSL 531
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 92 DLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELL--NLALHYAEEGKGILWLAEKF 147
DL K +E I L+ + +R KD T+K C+E L +L +Y I L E F
Sbjct: 210 DLPLLKTRIEEIVRALKNFKAFRPKDTTRKACVEQLKADLGSYYGYNSFLIGTLVEMF 267
>At5g37030.1 68418.m04441 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 638
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 20 MTKTSLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNV 79
MTK S +L NK +++ DA SIR + P LI +E D L L+ ++
Sbjct: 81 MTKESSGSLSNKLFYDMSINDALSIREKYQPKCGDLIALTKER--PRGVDDLNPLLLGSI 138
Query: 80 QLLTDDDIGIVV 91
+ T +I +++
Sbjct: 139 SVDTYPNISVIL 150
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/68 (22%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 69 DYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLN 128
+ L+D+ D V++LTDD + + + ++ ++ + ++Q+ E D++ K EC + +
Sbjct: 150 EQLKDVEMD-VKMLTDDKLRLEASVERKAHEVDILTSRIQELETQLDRE--KDECRRITS 206
Query: 129 LALHYAEE 136
+ + +E
Sbjct: 207 SSKKFVKE 214
>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
(HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}
Length = 651
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 94 RQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLNLALHYA 134
R KD +E + +Q+AEKY+ +D+ K+ +E N +YA
Sbjct: 515 RLSKDEIEKM---VQEAEKYKSEDEEHKKKVEAKNALENYA 552
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 69 DYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKY 113
DYLE+L+ N+ + ++ + L Q D + +C K E +
Sbjct: 459 DYLEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENF 503
>At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2
(HSC70-2) (HSP70-2) identical to SP|P22954 Heat shock
cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis
thaliana}
Length = 653
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 101 EHICDKLQKAEKYRDKDDTKKECLELLNLALHYA 134
E I +Q+AEKY+ +D+ K+ +E N +YA
Sbjct: 519 EDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYA 552
>At3g44940.1 68416.m04842 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 92 DLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLNLALHYAEE 136
+LR+R + L H+ D L K K RD+ K L L NL L ++
Sbjct: 43 ELRKRDEQLIHLEDVLTKTLKERDEALEKYNHLLLNNLLLQQKQQ 87
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,108
Number of Sequences: 28952
Number of extensions: 265586
Number of successful extensions: 676
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 12
length of query: 261
length of database: 12,070,560
effective HSP length: 80
effective length of query: 181
effective length of database: 9,754,400
effective search space: 1765546400
effective search space used: 1765546400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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