Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T108 Cluster: Heparanase-like protein; n=1; Bombyx mo...   145   1e-33
UniRef50_UPI0000D55C58 Cluster: PREDICTED: similar to heparanase...    39   0.14 
UniRef50_Q6F0I7 Cluster: Putative uncharacterized protein; n=1; ...    34   5.4  
UniRef50_Q2SC61 Cluster: NTP pyrophosphohydrolase containing a Z...    33   9.5  

>UniRef50_Q8T108 Cluster: Heparanase-like protein; n=1; Bombyx
           mori|Rep: Heparanase-like protein - Bombyx mori (Silk
           moth)
          Length = 515

 Score =  145 bits (352), Expect = 1e-33
 Identities = 70/98 (71%), Positives = 72/98 (73%)
 Frame = +1

Query: 256 NENXEDIKLISEDFLSFGIDTIEIENYNRINYSDTXXXXXXXXXXXXXXXXGGTMSERLI 435
           NEN EDIKLISEDFLSFGIDTIEIENYNRINYSDT                GGTMSERLI
Sbjct: 39  NENQEDIKLISEDFLSFGIDTIEIENYNRINYSDTRLRELAAALSPARLRLGGTMSERLI 98

Query: 436 FSKENIPISCHNCSYKSYPKSLCQLLKNHVNTNTSFYP 549
           FSKENIPISCHNCSYKSYPKSLCQL++        F P
Sbjct: 99  FSKENIPISCHNCSYKSYPKSLCQLIEKPCKHKHKFLP 136



 Score =  100 bits (240), Expect = 4e-20
 Identities = 46/68 (67%), Positives = 52/68 (76%)
 Frame = +3

Query: 510 IEKPCKHKHQFLPFFIMTGNEWNQINDFCRKTNLKLVFSLNACFVIIMGGMKRMLVYLLN 689
           IEKPCKHKH+FLPFFIMTGNEWNQINDFCRKTNLKL+FSLNA      G  ++    L+ 
Sbjct: 124 IEKPCKHKHKFLPFFIMTGNEWNQINDFCRKTNLKLLFSLNAMLRDNHGWNEKNARELIE 183

Query: 690 FPNPQQYA 713
           F   +QYA
Sbjct: 184 FSKHKQYA 191



 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +2

Query: 185 FCCNVAMLVLFVKYNGGVRYFVT 253
           FCCNVAMLVLFVKYNGGVRYFVT
Sbjct: 15  FCCNVAMLVLFVKYNGGVRYFVT 37


>UniRef50_UPI0000D55C58 Cluster: PREDICTED: similar to heparanase;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           heparanase - Tribolium castaneum
          Length = 520

 Score = 39.1 bits (87), Expect = 0.14
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 546 PFFIMTGNEWNQINDFCRKTNLKLVFSLNA 635
           P F M  +EW Q+N+  +KTNL+++F LN+
Sbjct: 152 PNFTMNSHEWLQLNELAQKTNLEIIFDLNS 181


>UniRef50_Q6F0I7 Cluster: Putative uncharacterized protein; n=1;
           Mesoplasma florum|Rep: Putative uncharacterized protein
           - Mesoplasma florum (Acholeplasma florum)
          Length = 219

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 646 ITKHAFNEN-TNFRLVFLQKSLIWFHSFPVIIKKGKNWCLCLHGFS 512
           I KH  N +  N  L  L+ SL ++    +++K   NW LC+  FS
Sbjct: 128 IYKHKINHSLANIMLANLESSLNFYGKIDLLLKSNDNWFLCIFKFS 173


>UniRef50_Q2SC61 Cluster: NTP pyrophosphohydrolase containing a
           Zn-finger, probably nucleic- acid-binding; n=1; Hahella
           chejuensis KCTC 2396|Rep: NTP pyrophosphohydrolase
           containing a Zn-finger, probably nucleic- acid-binding -
           Hahella chejuensis (strain KCTC 2396)
          Length = 269

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 424 ERLIFSKENIPISCHNCSYKSYPK-SLCQLLKNH 522
           ERL F++++  + CH C Y SYPK S C ++  H
Sbjct: 117 ERLGFNEKDRGLRCHGCGYISYPKVSPCVIVVVH 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,015,765
Number of Sequences: 1657284
Number of extensions: 16842251
Number of successful extensions: 36466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36454
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)