Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30030
(675 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 83 8e-15
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 77 5e-13
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 75 1e-12
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 71 2e-11
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 71 2e-11
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 71 2e-11
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 65 1e-09
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 65 1e-09
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 52 1e-05
UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1; N... 52 1e-05
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 51 2e-05
UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome sh... 50 7e-05
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 49 1e-04
UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19; Archa... 48 2e-04
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 48 2e-04
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 46 6e-04
UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 45 0.002
UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19; Archa... 42 0.010
UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529... 35 1.6
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 2.7
UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;... 33 6.3
UniRef50_UPI00005876EB Cluster: PREDICTED: similar to serotonin1... 33 8.4
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 82.6 bits (195), Expect = 8e-15
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
K+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 10 KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 76.6 bits (180), Expect = 5e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K+ L KK+KQNRPIP W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 38 KKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 75.4 bits (177), Expect = 1e-12
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
KR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 10 KRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 51 KKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 89 KKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/42 (69%), Positives = 34/42 (80%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 95 KKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 65.3 bits (152), Expect = 1e-09
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 79 KKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 65.3 bits (152), Expect = 1e-09
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 47 KKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 105
K+ LA+K KQNRPIPQW++M+TG+ IRYN+K
Sbjct: 10 KQFLAQKQKQNRPIPQWIQMKTGDKIRYNSK 40
>UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1;
Neosartorya fischeri NRRL 181|Rep: Ribosomal protein
L39, putative - Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / NRRL 181)(Aspergillus fischerianus (strain
ATCC 1020 / DSM 3700 / NRRL 181))
Length = 69
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIR 117
K+KLAK +QNRPIPQW+R+RTGNTIR
Sbjct: 43 KQKLAKAQRQNRPIPQWIRLRTGNTIR 69
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K +L K LK+N PIP WV ++T IR+N RR+WRR LK+
Sbjct: 10 KLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome
shotgun sequence; n=6; Fungi/Metazoa group|Rep:
Chromosome 1 SCAF14998, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 503
Score = 49.6 bits (113), Expect = 7e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTI 120
KR LAKK KQNRPIPQW+RM+TGN I
Sbjct: 437 KRFLAKKQKQNRPIPQWIRMKTGNKI 462
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 75
K +L KK KQNR +P WV ++T + N RR+WRR K+K
Sbjct: 13 KIRLGKKTKQNRALPAWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanococcus
jannaschii
Length = 51
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 75
K +LAK LKQNR +P +V ++T +R++ K R+WRR KLK
Sbjct: 10 KVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 50
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K +L + LK+NR IP W RM + YN RRHWR KLK+
Sbjct: 10 KTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 46.4 bits (105), Expect = 6e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
K++LAK +QN +P WV M+T + N KRR+WRR L
Sbjct: 23 KKRLAKAERQNTRVPAWVMMKTDMNVTRNPKRRNWRRNDL 62
>UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -1
Query: 195 AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKDKAQVVS 67
A+ QKAE KQTHS+V ++AH KHY + R SLE +A+ VS
Sbjct: 110 AEACQKAEAKQTHSTVDQNAHWKHYPLQRQAPSLETYEAEAVS 152
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 72
K +L KK KQ P+P W+ ++T +R N KRR WR T +++
Sbjct: 10 KIRLQKKTKQAAPVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanosarcina
mazei (Methanosarcina frisia)
Length = 51
Score = 42.3 bits (95), Expect = 0.010
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 197 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 78
K++LAK KQN +P W ++T + + +RRHWRR L
Sbjct: 9 KKRLAKAHKQNSRVPVWAIVKTNRKVVSHPRRRHWRRGSL 48
>UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH0529 - Pyrococcus horikoshii
Length = 174
Score = 35.1 bits (77), Expect = 1.6
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +1
Query: 28 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANL 192
Y +F L HS ++LSFVLLQ L + + V +T G LFCF LA+L
Sbjct: 104 YNLFSGLDHPHSP-HSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASL 157
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 2.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2
Query: 116 YNAKRRHWRRTKL 78
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
>UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein BUD19 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 102
Score = 33.1 bits (72), Expect = 6.3
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 69 LQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRL 212
L + L SPV+ LSV+++SV + PL SVL F L+++RL
Sbjct: 13 LDVHLGSSPVSSLSVVTDSVVGSQSDPLWQWSVLLLSLSHFLLDSERL 60
>UniRef50_UPI00005876EB Cluster: PREDICTED: similar to serotonin1A
receptor, partial; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to serotonin1A
receptor, partial - Strongylocentrotus purpuratus
Length = 266
Score = 32.7 bits (71), Expect = 8.4
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +3
Query: 225 FSVRRPPWLAREAMGGRWHVSLKINLRRG*CIVLIILALKCMMLRCNLNRKTSFRICAAI 404
++VRR P LA + +G W +S +++ + ++ L+C + R +F IC++
Sbjct: 128 YAVRRTPTLAAKIIGAVWSLSFLVSVP-----AVFVIDYSNETLQCGIQRNAAFAICSSF 182
Query: 405 SQRY 416
Y
Sbjct: 183 VSFY 186
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,403,045
Number of Sequences: 1657284
Number of extensions: 9101562
Number of successful extensions: 18790
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18775
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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