Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30017
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    34   2.6  
UniRef50_A7TLR4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 88  VSQCLKTKVFNQCILPAM 35
           + QCLK+KVF+QC+LP M
Sbjct: 346 IPQCLKSKVFDQCVLPVM 363


>UniRef50_A7TLR4 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 655

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 388 HSCNTCLCYE--ILQFISFTLIT*LAMSKNVLNDYIYIIVNEILLE 519
           +SC+   CYE  ILQF  F   T +    + LN+Y+ +  N+I+L+
Sbjct: 106 YSCHLKYCYEFFILQFGEFNSFTNINQLTDSLNEYLVLFWNDIILK 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,978,249
Number of Sequences: 1657284
Number of extensions: 9114269
Number of successful extensions: 13883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13883
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)