SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10404
         (565 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu...   144   1e-33
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul...   125   8e-28
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4...   116   4e-25
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu...    93   4e-18
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze...    90   4e-17
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ...    85   1e-15
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa...    83   3e-15
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce...    75   2e-12
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full...    60   5e-08
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;...    55   1e-06
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ...    51   2e-05
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr...    47   3e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=...    45   0.001
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|...    41   0.017
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria...    41   0.017
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso...    39   0.093
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|...    38   0.21 
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ...    36   0.86 
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar...    36   0.86 
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria...    36   0.86 
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul...    36   0.86 
UniRef50_Q5K6X0 Cluster: Ribosomal protein S12, putative; n=2; D...    35   1.1  
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_O85884 Cluster: Putative uncharacterized protein orf433...    33   4.6  
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh...    33   4.6  
UniRef50_UPI000049A59F Cluster: ankyrin repeat protein; n=1; Ent...    32   8.1  
UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;...    32   8.1  

>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
           organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
           (Human)
          Length = 143

 Score =  144 bits (349), Expect = 1e-33
 Identities = 66/80 (82%), Positives = 74/80 (92%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 201
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGRK 261
           QPNSAIRKCVRVQLIKNG+K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80



 Score =  129 bits (312), Expect = 4e-29
 Identities = 61/65 (93%), Positives = 62/65 (95%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK
Sbjct: 79  KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138

Query: 435 ERPRS 449
           ERPRS
Sbjct: 139 ERPRS 143


>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
           organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 145

 Score =  125 bits (301), Expect = 8e-28
 Identities = 55/79 (69%), Positives = 68/79 (86%)
 Frame = +1

Query: 25  GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 204
           GKPRG+ +ARK   HRR  RWA+  +KK  +GT +K++PFGG+SHAKGIVLEK+G+E+KQ
Sbjct: 4   GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQ 63

Query: 205 PNSAIRKCVRVQLIKNGRK 261
           PNSAIRKCVRVQLIKNG+K
Sbjct: 64  PNSAIRKCVRVQLIKNGKK 82



 Score =  117 bits (281), Expect = 2e-25
 Identities = 54/65 (83%), Positives = 60/65 (92%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           KKVTAFVP DGCLN ++ENDEVL+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKK
Sbjct: 81  KKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKK 140

Query: 435 ERPRS 449
           E+PRS
Sbjct: 141 EKPRS 145


>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
           Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
           Oryza sativa (Rice)
          Length = 301

 Score =  116 bits (279), Expect = 4e-25
 Identities = 52/78 (66%), Positives = 61/78 (78%)
 Frame = +1

Query: 28  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 207
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 208 NSAIRKCVRVQLIKNGRK 261
           NSAI KC RVQL+KNG+K
Sbjct: 133 NSAICKCARVQLVKNGKK 150



 Score = 37.1 bits (82), Expect = 0.28
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEV 320
           KK+ AFVP DGCLN I+EN  V
Sbjct: 149 KKIAAFVPNDGCLNFIKENGPV 170


>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
           organisms|Rep: 30S ribosomal protein S12P - Uncultured
           methanogenic archaeon RC-I
          Length = 142

 Score = 93.1 bits (221), Expect = 4e-18
 Identities = 43/70 (61%), Positives = 55/70 (78%)
 Frame = +1

Query: 52  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 231
           RK V+ R+  RW+D+++ +  +    KA+P  GA  AKGIVLEKVGVEAKQPNSAIRKC+
Sbjct: 9   RKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCI 68

Query: 232 RVQLIKNGRK 261
           R+QLIKNGR+
Sbjct: 69  RIQLIKNGRQ 78



 Score = 69.3 bits (162), Expect = 6e-11
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFG-RKGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
           +++TAF P DG +N I+E+DEV + G G R G + GDIPGVRF+V KV +VSL  +   K
Sbjct: 77  RQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGK 136

Query: 432 KERP 443
           +++P
Sbjct: 137 RDKP 140


>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
           mays|Rep: Putative 40S ribosomal protein - Zea mays
           (Maize)
          Length = 309

 Score = 89.8 bits (213), Expect = 4e-17
 Identities = 41/46 (89%), Positives = 45/46 (97%)
 Frame = +3

Query: 312 DEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 449
           DEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 224 DEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269


>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 102

 Score = 84.6 bits (200), Expect = 1e-15
 Identities = 42/67 (62%), Positives = 47/67 (70%)
 Frame = -1

Query: 457 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 278
           Y YDLG SFFS  +A ++T  T TTL  TPG+SP A PL P PA  TSSFSS  F+QPS 
Sbjct: 3   YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSFSSTKFKQPSF 62

Query: 277 GTNAVTF 257
           GT AVTF
Sbjct: 63  GTKAVTF 69



 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -3

Query: 278 GDECGHFLPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 159
           G +   FLPFL++ T TH  +AE GCL S P FS+T+P A
Sbjct: 63  GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102


>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
           Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
           aerophilum
          Length = 147

 Score = 83.4 bits (197), Expect = 3e-15
 Identities = 39/76 (51%), Positives = 53/76 (69%)
 Frame = +1

Query: 31  PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 210
           P G+    K    R++ RW D  +K+  +G   K +P  GA  A+GIVLEKVGVEA++PN
Sbjct: 7   PYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPN 66

Query: 211 SAIRKCVRVQLIKNGR 258
           +A+RKCVRVQL+KNG+
Sbjct: 67  AAVRKCVRVQLVKNGK 82



 Score = 78.2 bits (184), Expect = 1e-13
 Identities = 37/64 (57%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
           K VTAFVP DG LN+I E+DEV++   G  +G ++GDIPGVRFKV+KV  VSL A+++ K
Sbjct: 82  KVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGK 141

Query: 432 KERP 443
           K++P
Sbjct: 142 KQKP 145


>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
           cellular organisms|Rep: Protein splicing (Intein) site -
           Caldivirga maquilingensis IC-167
          Length = 661

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 36/74 (48%), Positives = 50/74 (67%)
 Frame = +1

Query: 31  PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 210
           P G+  ARK    R++ RW+D ++KK  +G   K +P  GA  A+GIVLEKVGVEA++PN
Sbjct: 7   PLGLYAARKLRRKRQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPN 66

Query: 211 SAIRKCVRVQLIKN 252
           +A+RKCV    + N
Sbjct: 67  AAVRKCVTPDTLIN 80



 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKEK 431
           K VTAFVP DG LN I E+DEV++   G  +G A GD+PGVRFKV KV  VSL A+   K
Sbjct: 596 KVVTAFVPWDGGLNLINEHDEVIIERIGGPEGRAYGDLPGVRFKVTKVNGVSLKAILLGK 655

Query: 432 KERP 443
           K++P
Sbjct: 656 KQKP 659


>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
           full-length enriched library, clone:A330001L23
           product:hypothetical protein, full insert sequence; n=8;
           Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
           full-length enriched library, clone:A330001L23
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 154

 Score = 59.7 bits (138), Expect = 5e-08
 Identities = 33/85 (38%), Positives = 44/85 (51%)
 Frame = -2

Query: 261 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 82
           L  VLNEL+ DA  DGR+ L      F + ++LC+R T +R+ L     VGFL  FV P 
Sbjct: 31  LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPL 90

Query: 81  LFTTVVHVLTRRSYSSGFTHLDSTT 7
           L  +V   L   S ++   HL   T
Sbjct: 91  LVPSVTAELPGSSETTTLAHLAGAT 115


>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 143

 Score = 54.8 bits (126), Expect = 1e-06
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = -2

Query: 261 LSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPS 82
           L  VLNEL+ DA  DGR+ L      F + ++LC+R   +R+ L     VGFL  FV P 
Sbjct: 62  LLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPL 121

Query: 81  LFTTVVHVLTRRSYSSGFTH 22
           L  +V   L   S ++   H
Sbjct: 122 LVPSVTAELPGSSETTTLAH 141



 Score = 40.3 bits (90), Expect = 0.030
 Identities = 20/59 (33%), Positives = 35/59 (59%)
 Frame = -3

Query: 422 VESEERHVGYFYHLKTNSGNVTDGVTFTTESRH*YXXXXXXXX*ATVTGDECGHFLPFL 246
           ++S++R++GYF HLK +S ++T  +TF+T+S + +         A + G E    LP L
Sbjct: 9   LQSQQRNIGYFNHLKEDSRDITYSMTFSTKSSN-WIIIFLNEVQAAIIGHERCDLLPVL 66


>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 128

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +3

Query: 312 DEVLVAGFGRKGHAVGDIPGVRFKVVK 392
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
           ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to mitochondrial ribosomal protein
           S12 - Nasonia vitripennis
          Length = 173

 Score = 46.8 bits (106), Expect = 3e-04
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +1

Query: 136 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           NPF GA  AKG+VL+ +  + K+PNSA RKCV V+L  NG++
Sbjct: 83  NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123


>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
           Coelomata|Rep: Mitochondrial ribosomal protein S12 -
           Bombyx mori (Silk moth)
          Length = 111

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +1

Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           H+  +   NP  G   AKG+VL+ V  + K+PNSA RKCV V+L  NG++
Sbjct: 13  HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61


>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
           Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
           melanogaster (Fruit fly)
          Length = 154

 Score = 41.1 bits (92), Expect = 0.017
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +1

Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 56  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99


>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
           precursor; n=7; Coelomata|Rep: 40S ribosomal protein
           S12, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 140

 Score = 41.1 bits (92), Expect = 0.017
 Identities = 20/44 (45%), Positives = 28/44 (63%)
 Frame = +1

Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85


>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
           protein S12, mitochondrial precursor (MT-RPS12)
           (Technical knockout locus protein); n=2; Coelomata|Rep:
           PREDICTED: similar to 40S ribosomal protein S12,
           mitochondrial precursor (MT-RPS12) (Technical knockout
           locus protein) - Tribolium castaneum
          Length = 156

 Score = 38.7 bits (86), Expect = 0.093
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +1

Query: 112 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           H+  +    P  G    KG+VL+ +  + K+PNSA RKCV V+L  NG++
Sbjct: 60  HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108


>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
           Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
           (African clawed frog)
          Length = 150

 Score = 37.5 bits (83), Expect = 0.21
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +1

Query: 139 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           P  G    KG+VL+ +  + K+PNSA RKC RV+L  NG++
Sbjct: 62  PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101


>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 157

 Score = 35.5 bits (78), Expect = 0.86
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 148 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 243
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
           Saccharomycetales|Rep: 30S ribosomal protein S12 -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 183

 Score = 35.5 bits (78), Expect = 0.86
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +1

Query: 163 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGR 258
           +G++L  + ++ K+PNSA+RKC RV+L  NG+
Sbjct: 90  RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120


>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
           precursor; n=13; Deuterostomia|Rep: 28S ribosomal
           protein S12, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 138

 Score = 35.5 bits (78), Expect = 0.86
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 130 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRK 261
           K  P  G    KG+VL     + K+PNSA RKC RV+L   GR+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGRE 90


>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
           organisms|Rep: 30S ribosomal protein S12 - Aquifex
           aeolicus
          Length = 128

 Score = 35.5 bits (78), Expect = 0.86
 Identities = 20/47 (42%), Positives = 34/47 (72%)
 Frame = +3

Query: 258 KVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 398
           +VTA++P +G  ++++E+  VLV G GR    V D+PGVR+K+++ A
Sbjct: 62  EVTAYIPGEG--HNLQEHSIVLVRG-GR----VKDLPGVRYKIIRGA 101



 Score = 32.7 bits (71), Expect = 6.1
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 124 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 255
           K KA    G    +G+ +    V  K+PNSA+RK  RV+L  NG
Sbjct: 18  KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60


>UniRef50_Q5K6X0 Cluster: Ribosomal protein S12, putative; n=2;
           Dikarya|Rep: Ribosomal protein S12, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 176

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = +3

Query: 264 TAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK 392
           TA++P +G  ++++E+  VLV G G K     D+PGVR+K+V+
Sbjct: 115 TAYIPGEG--HNLQEHSVVLVRGGGAK-----DLPGVRYKIVR 150


>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
           Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
           protein - Mesorhizobium sp. (strain BNC1)
          Length = 338

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 257 LPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 159
           LP   +  R+H ++ E+ C  + P +S T+PFA
Sbjct: 239 LPTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271


>UniRef50_O85884 Cluster: Putative uncharacterized protein orf433;
           n=2; Novosphingobium aromaticivorans|Rep: Putative
           uncharacterized protein orf433 - Sphingomonas
           aromaticivorans
          Length = 651

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 333 IPPLVLRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVR 154
           +P      +LR  +GN HG +++ + + LN+L  + F D R  + + +T      A  + 
Sbjct: 94  VPVWAAHEYLRHHMGNLHGKKLKGIETALNDLANNTFNDLRPYIDTSFTGDSRSPAEIIA 153

Query: 153 CT 148
            T
Sbjct: 154 AT 155


>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_29,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 107

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 55  KHVNHRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 228
           K   H+R Q   W  K+F K  + T+ +    G   H KG+++ K G    + N  + + 
Sbjct: 26  KITKHKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEK 85

Query: 229 VRVQLIKNGRK 261
            +++L++  R+
Sbjct: 86  EKIELVQLKRE 96


>UniRef50_UPI000049A59F Cluster: ankyrin repeat protein; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: ankyrin repeat
           protein - Entamoeba histolytica HM-1:IMSS
          Length = 681

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +3

Query: 255 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 434
           + V+ F+P +  L  ++ N+ V V    +KG AVG I G R+ +  +A  +++ L KE++
Sbjct: 548 RMVSDFMPEEEELLRLKSNEIVEVYWEHKKGWAVGGING-RYGMFPLAKGTIIPLSKEEQ 606

Query: 435 ERPRS 449
           ++  S
Sbjct: 607 DKINS 611


>UniRef50_A4XF13 Cluster: Transcriptional regulator, LysR family;
           n=1; Novosphingobium aromaticivorans DSM 12444|Rep:
           Transcriptional regulator, LysR family - Novosphingobium
           aromaticivorans (strain DSM 12444)
          Length = 315

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 52  RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 204
           R+H    +   W   EF  A  G  W ANP G A+ A G+V      + KQ
Sbjct: 193 RRHAGALQSLGWG-YEFDAALPGGPWSANPAGEAAQAAGLVTFNAWPQLKQ 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,628,321
Number of Sequences: 1657284
Number of extensions: 12809981
Number of successful extensions: 32526
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 31237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32401
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -