Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30027
(765 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 176 6e-43
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 170 4e-41
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 122 1e-26
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 115 1e-24
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 113 3e-24
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 107 4e-22
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 104 3e-21
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 101 2e-20
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 101 2e-20
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 91 2e-17
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 89 1e-16
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 87 5e-16
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 86 1e-15
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 83 7e-15
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 82 2e-14
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 81 3e-14
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 81 3e-14
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 81 3e-14
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 81 4e-14
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 80 5e-14
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 80 7e-14
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 79 9e-14
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 79 1e-13
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 79 1e-13
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 79 2e-13
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 78 2e-13
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 78 3e-13
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 78 3e-13
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 78 3e-13
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 77 5e-13
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 77 5e-13
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 77 6e-13
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 76 8e-13
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 76 1e-12
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 76 1e-12
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 75 1e-12
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 75 1e-12
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 75 1e-12
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 75 1e-12
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 75 2e-12
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 75 2e-12
UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9; Bact... 75 2e-12
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 75 2e-12
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 75 3e-12
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 75 3e-12
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 75 3e-12
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 74 3e-12
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 74 3e-12
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 74 4e-12
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 73 6e-12
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 73 6e-12
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 73 6e-12
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 73 1e-11
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 73 1e-11
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 72 1e-11
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 72 2e-11
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 71 2e-11
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 71 2e-11
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 71 2e-11
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 71 3e-11
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 71 4e-11
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 71 4e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 70 6e-11
UniRef50_UPI0000E23613 Cluster: PREDICTED: similar to eukaryotic... 70 6e-11
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 70 6e-11
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 70 6e-11
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 70 6e-11
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 70 6e-11
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 70 6e-11
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 70 6e-11
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 70 7e-11
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 70 7e-11
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 70 7e-11
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 70 7e-11
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 70 7e-11
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n... 69 1e-10
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 69 1e-10
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 69 1e-10
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 69 1e-10
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 69 2e-10
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 69 2e-10
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 69 2e-10
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 2e-10
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 69 2e-10
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 69 2e-10
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 69 2e-10
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 69 2e-10
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 68 2e-10
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 68 2e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 68 3e-10
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 68 3e-10
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 68 3e-10
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 68 3e-10
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 68 3e-10
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 68 3e-10
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 68 3e-10
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 68 3e-10
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 68 3e-10
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 68 3e-10
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 68 3e-10
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 68 3e-10
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 68 3e-10
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 68 3e-10
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 67 4e-10
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 67 4e-10
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 67 4e-10
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 67 4e-10
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 67 4e-10
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 67 5e-10
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 67 5e-10
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 67 5e-10
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 67 5e-10
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 67 5e-10
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 66 7e-10
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 66 7e-10
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 66 7e-10
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 66 9e-10
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 66 9e-10
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 66 9e-10
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 66 1e-09
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 66 1e-09
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 66 1e-09
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 66 1e-09
UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5; Bact... 66 1e-09
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 66 1e-09
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 66 1e-09
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 65 2e-09
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 65 2e-09
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 65 2e-09
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 65 2e-09
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 65 2e-09
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 65 2e-09
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 65 2e-09
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 65 2e-09
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 65 2e-09
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 65 2e-09
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 65 2e-09
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 65 2e-09
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 65 2e-09
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 65 2e-09
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 65 2e-09
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 65 2e-09
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 65 2e-09
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 65 2e-09
UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2; Lactob... 64 3e-09
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 64 3e-09
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 64 3e-09
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 64 3e-09
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 64 3e-09
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 64 3e-09
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 64 3e-09
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 64 3e-09
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 64 3e-09
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 64 4e-09
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 64 4e-09
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 64 4e-09
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 64 4e-09
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 64 4e-09
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 64 4e-09
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 64 4e-09
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 5e-09
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 64 5e-09
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 64 5e-09
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 64 5e-09
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 64 5e-09
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 64 5e-09
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 64 5e-09
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 63 6e-09
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 63 6e-09
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 63 6e-09
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 63 6e-09
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 63 6e-09
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 63 6e-09
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 63 6e-09
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 63 6e-09
UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|R... 63 6e-09
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 63 6e-09
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 63 6e-09
UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, wh... 63 6e-09
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 63 6e-09
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 63 6e-09
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 63 8e-09
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 63 8e-09
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 63 8e-09
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 63 8e-09
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 63 8e-09
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 63 8e-09
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 62 1e-08
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 62 1e-08
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 62 1e-08
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 62 1e-08
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 62 1e-08
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 62 1e-08
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 62 1e-08
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 62 1e-08
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 62 1e-08
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 62 1e-08
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 62 1e-08
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 62 1e-08
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 62 1e-08
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 62 1e-08
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 62 2e-08
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 62 2e-08
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 62 2e-08
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 62 2e-08
UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 62 2e-08
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 62 2e-08
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 62 2e-08
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 62 2e-08
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 61 3e-08
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 3e-08
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 61 3e-08
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 61 3e-08
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 61 3e-08
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 61 3e-08
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 61 3e-08
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 61 3e-08
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 61 3e-08
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 61 3e-08
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 61 3e-08
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 3e-08
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 61 3e-08
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 61 3e-08
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 61 3e-08
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 61 3e-08
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 61 3e-08
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 61 3e-08
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 60 4e-08
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 60 4e-08
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 60 4e-08
UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 60 4e-08
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 60 4e-08
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 60 4e-08
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 60 4e-08
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 60 4e-08
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 60 4e-08
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 60 4e-08
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 60 4e-08
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 60 4e-08
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 60 6e-08
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 60 6e-08
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 60 6e-08
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 60 6e-08
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 60 8e-08
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 60 8e-08
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 60 8e-08
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 60 8e-08
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 60 8e-08
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 60 8e-08
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 60 8e-08
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 60 8e-08
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 59 1e-07
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 59 1e-07
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 59 1e-07
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 59 1e-07
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 59 1e-07
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 59 1e-07
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 59 1e-07
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 59 1e-07
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 59 1e-07
UniRef50_Q1JSQ3 Cluster: Dead-box helicase, putative; n=1; Toxop... 59 1e-07
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 59 1e-07
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 59 1e-07
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 59 1e-07
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 59 1e-07
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 59 1e-07
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 59 1e-07
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 59 1e-07
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 59 1e-07
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 59 1e-07
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 59 1e-07
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 59 1e-07
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 59 1e-07
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 59 1e-07
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 58 2e-07
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 58 2e-07
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 58 2e-07
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 58 2e-07
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 58 2e-07
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 58 2e-07
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 58 2e-07
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 58 2e-07
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 58 2e-07
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 58 2e-07
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 58 2e-07
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 58 2e-07
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 58 2e-07
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 58 2e-07
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 58 2e-07
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 58 2e-07
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 58 3e-07
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 58 3e-07
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 58 3e-07
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 58 3e-07
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 58 3e-07
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 58 3e-07
UniRef50_Q3LWF0 Cluster: ATP-dependent RNA helicase; n=1; Bigelo... 58 3e-07
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 58 3e-07
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 58 3e-07
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 58 3e-07
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 58 3e-07
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 58 3e-07
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 58 3e-07
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 57 4e-07
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 57 4e-07
UniRef50_Q1U8H0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 57 4e-07
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 57 4e-07
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 57 4e-07
UniRef50_Q7QA96 Cluster: ENSANGP00000013118; n=5; Eumetazoa|Rep:... 57 4e-07
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 57 4e-07
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 57 4e-07
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 57 4e-07
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 57 4e-07
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 57 4e-07
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 57 6e-07
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 57 6e-07
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 57 6e-07
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 57 6e-07
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 57 6e-07
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 57 6e-07
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 57 6e-07
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 57 6e-07
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_A7ECJ8 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 57 6e-07
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 57 6e-07
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 57 6e-07
UniRef50_UPI0001553738 Cluster: PREDICTED: hypothetical protein;... 56 7e-07
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 56 7e-07
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 56 7e-07
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 56 7e-07
UniRef50_A2WLP5 Cluster: Putative uncharacterized protein; n=3; ... 56 7e-07
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 56 7e-07
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q6FML5 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 56 7e-07
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 56 1e-06
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 56 1e-06
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 56 1e-06
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 56 1e-06
UniRef50_Q54CD6 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_Q4UG97 Cluster: ATP-dependent RNA helicase, putative; n... 56 1e-06
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 56 1e-06
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 56 1e-06
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 56 1e-06
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 56 1e-06
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 56 1e-06
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 56 1e-06
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 56 1e-06
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 56 1e-06
UniRef50_Q2J919 Cluster: Helicase-like; n=3; Frankia|Rep: Helica... 56 1e-06
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 56 1e-06
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 56 1e-06
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 56 1e-06
UniRef50_Q5CWD0 Cluster: Prp5p C terminal KH. eIF4A-1-family RNA... 56 1e-06
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 56 1e-06
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 56 1e-06
UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein; ... 56 1e-06
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 56 1e-06
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 56 1e-06
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 56 1e-06
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 56 1e-06
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 56 1e-06
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 55 2e-06
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 55 2e-06
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 55 2e-06
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 55 2e-06
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ... 55 2e-06
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 55 2e-06
UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n... 55 2e-06
UniRef50_Q4QIG1 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 55 2e-06
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 55 2e-06
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 55 2e-06
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 55 2e-06
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 55 2e-06
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 55 2e-06
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 55 2e-06
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 55 2e-06
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 55 2e-06
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 55 2e-06
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 55 2e-06
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_Q7R0K7 Cluster: GLP_154_39979_41331; n=1; Giardia lambl... 55 2e-06
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 55 2e-06
UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n... 55 2e-06
UniRef50_Q234J0 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 55 2e-06
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 55 2e-06
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 55 2e-06
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 55 2e-06
UniRef50_A4RK80 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 55 2e-06
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 54 3e-06
UniRef50_Q92AT6 Cluster: Lin1833 protein; n=13; Listeria|Rep: Li... 54 3e-06
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 54 3e-06
UniRef50_O54116 Cluster: Probable DEAD-box RNA helicase; n=10; S... 54 3e-06
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 54 3e-06
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 54 3e-06
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 54 3e-06
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 54 3e-06
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 54 3e-06
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 54 3e-06
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 54 3e-06
UniRef50_P21372 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 54 3e-06
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 54 3e-06
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 54 4e-06
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 54 4e-06
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 54 4e-06
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 54 4e-06
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 54 4e-06
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 54 4e-06
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 54 4e-06
UniRef50_Q7PMT7 Cluster: ENSANGP00000010668; n=1; Anopheles gamb... 54 4e-06
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 54 4e-06
UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa... 54 4e-06
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 54 4e-06
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 54 4e-06
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 54 4e-06
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 54 4e-06
UniRef50_A0CUN8 Cluster: Chromosome undetermined scaffold_28, wh... 54 4e-06
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 54 4e-06
UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 4e-06
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 54 4e-06
UniRef50_Q03GJ4 Cluster: Superfamily II DNA and RNA helicase; n=... 54 5e-06
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 54 5e-06
UniRef50_A7P8T9 Cluster: Chromosome chr3 scaffold_8, whole genom... 54 5e-06
UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus lu... 54 5e-06
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 54 5e-06
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 54 5e-06
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 54 5e-06
UniRef50_Q65XX1 Cluster: Vasa-and belle-like helicase protein 1,... 54 5e-06
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 54 5e-06
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 54 5e-06
UniRef50_A7RMK9 Cluster: Predicted protein; n=1; Nematostella ve... 54 5e-06
UniRef50_A2G6R5 Cluster: DEAD/DEAH box helicase family protein; ... 54 5e-06
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 54 5e-06
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 54 5e-06
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 54 5e-06
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;... 54 5e-06
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 54 5e-06
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 54 5e-06
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 54 5e-06
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 53 7e-06
UniRef50_UPI0000F1E5FF Cluster: PREDICTED: similar to Pl10, part... 53 7e-06
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 53 7e-06
UniRef50_Q8A8L3 Cluster: ATP-independent RNA helicase; n=7; Bact... 53 7e-06
UniRef50_Q0HLM7 Cluster: DEAD/DEAH box helicase domain protein; ... 53 7e-06
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 53 7e-06
UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2; Crypto... 53 7e-06
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 53 7e-06
UniRef50_A7TRT2 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_P25808 Cluster: ATP-dependent rRNA helicase SPB4; n=10;... 53 7e-06
UniRef50_Q4P9E5 Cluster: ATP-dependent rRNA helicase SPB4; n=2; ... 53 7e-06
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 53 7e-06
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 53 7e-06
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 53 7e-06
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 53 9e-06
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 53 9e-06
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 53 9e-06
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 53 9e-06
UniRef50_Q9N341 Cluster: Putative uncharacterized protein; n=2; ... 53 9e-06
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 53 9e-06
UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5; T... 53 9e-06
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 53 9e-06
UniRef50_A4V6K8 Cluster: Putative RNA helicase protein; n=1; Dug... 53 9e-06
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 53 9e-06
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 53 9e-06
UniRef50_A1XCP2 Cluster: Vasa-like protein; n=2; Coelomata|Rep: ... 53 9e-06
UniRef50_Q66HG7 Cluster: Probable ATP-dependent RNA helicase DDX... 53 9e-06
UniRef50_P34640 Cluster: Probable ATP-dependent RNA helicase DDX... 53 9e-06
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 53 9e-06
UniRef50_Q5KHB7 Cluster: ATP-dependent RNA helicase DBP3; n=2; F... 53 9e-06
UniRef50_UPI00006CA44F Cluster: DEAD/DEAH box helicase family pr... 52 1e-05
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 52 1e-05
UniRef50_UPI00003937F7 Cluster: COG0513: Superfamily II DNA and ... 52 1e-05
UniRef50_Q8G5U3 Cluster: Possible ATP-dependent RNA helicase; n=... 52 1e-05
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 52 1e-05
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 52 1e-05
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 52 1e-05
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 52 1e-05
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 52 1e-05
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 52 1e-05
UniRef50_A7AV91 Cluster: DEAD/DEAH box helicase, putative; n=1; ... 52 1e-05
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 176 bits (428), Expect = 6e-43
Identities = 104/214 (48%), Positives = 134/214 (62%), Gaps = 11/214 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD++N +CHACIGGTNV
Sbjct: 87 GKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNV 146
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
EDIR+L+ G HVV GTPGRV+DMI R + T + +K++ + M++
Sbjct: 147 GEDIRKLDYGQHVVAGTPGRVFDMIR-RRSLRTRA-----IKML----VLDEADEMLNKG 196
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL----------YAYLYRRKSLPWKVLNN-FT 507
F + ++ Y L P + EIL L +R L + + F
Sbjct: 197 FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 256
Query: 508 CIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+E EEWK +TLCDLYDTL+I QAVIFCNT+RKV
Sbjct: 257 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290
Score = 116 bits (280), Expect = 5e-25
Identities = 68/169 (40%), Positives = 99/169 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+P ++LE++ F
Sbjct: 173 RRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKF 232
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRMEAGNSV*PV*YTVYCTSCNFLQHPSQGGIG 617
M DP+RILV+++ELTLEGIKQF++ R +++ + T+ T + +
Sbjct: 233 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 292
Query: 618 SLNLCICVTLLYLLCMGDMDQREPEVIMKAVSYWLLLVS*FTTDLWARG 764
GDM Q+E E IMK V +TD+WARG
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL-ISTDVWARG 340
Score = 33.1 bits (72), Expect = 7.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE M +FTVS+MHG
Sbjct: 291 DWLTEKMREANFTVSSMHG 309
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 170 bits (413), Expect = 4e-41
Identities = 98/208 (47%), Positives = 137/208 (65%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD++ A CHACIGGTNV
Sbjct: 82 GKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 141
Query: 181 REDIRQLES-GVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSS 357
R ++++L++ H+VVGTPGRV+DM L R++ +P ++ + L + +SR
Sbjct: 142 RNEMQKLQAEAPHIVVGTPGRVFDM-LNRRYL-SP-KWIKMFVLDEADEMLSRGFKDQIY 198
Query: 358 RFCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAYLYRRKSLPWKVLNNFTC-IELEE 525
Q + S +L M L+ + + L +++ L + + F +E EE
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREE 258
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
WKL+TLCDLY+TL+I QAVIF NTRRKV
Sbjct: 259 WKLDTLCDLYETLTITQAVIFLNTRRKV 286
Score = 135 bits (327), Expect = 1e-30
Identities = 81/169 (47%), Positives = 105/169 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR L IK+FVLDEADEMLSRGFKDQI+++F+ L+ +QV+LLSATMP DVLEV++ F
Sbjct: 169 RRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 228
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRMEAGNSV*PV*YTVYCTSCNFLQHPSQGGIG 617
MRDP+RILV+KEELTLEGIKQFY++ R +++ + T+ T + +
Sbjct: 229 MRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDW 288
Query: 618 SLNLCICVTLLYLLCMGDMDQREPEVIMKAVSYWLLLVS*FTTDLWARG 764
GDMDQ+E +VIM+ V TTDL ARG
Sbjct: 289 LTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVL-ITTDLLARG 336
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 512 LN*KNGSWKLCVTCMIH---CLLHKL*FSATPVARWDWLTESMHLRDFTVSAMHG 667
+N + WKL C ++ + + F T + DWLTE MH RDFTVSA+HG
Sbjct: 252 INVEREEWKLDTLCDLYETLTITQAVIFLNTR-RKVDWLTEKMHARDFTVSALHG 305
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 122 bits (294), Expect = 1e-26
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 11/214 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATFS+S+LQ +D Q L+ ALGD++N +CHACIGGTNV
Sbjct: 87 GKTATFSVSVLQCLDI-----QGLL----------------ALGDYMNVQCHACIGGTNV 125
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
EDIR+L+ G HVV GTPGRV+DMI R + T + +K++ + M++
Sbjct: 126 GEDIRKLDYGQHVVAGTPGRVFDMIR-RRSLRTRA-----IKML----VLDEADEMLNKG 175
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL----------YAYLYRRKSLPWKVLNN-FT 507
F + ++ Y L P + EIL L +R L + + F
Sbjct: 176 FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFV 235
Query: 508 CIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+E EEWK +TLCDLYDTL+I QAVIFCNT+RKV
Sbjct: 236 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 269
Score = 112 bits (269), Expect = 1e-23
Identities = 49/84 (58%), Positives = 70/84 (83%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR+L IK+ VLDEADEML++GFK+QI+DV++ L QV+L+SAT+P ++LE++ F
Sbjct: 152 RRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKF 211
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
M DP+RILV+++ELTLEGIKQF++
Sbjct: 212 MTDPIRILVKRDELTLEGIKQFFV 235
Score = 33.1 bits (72), Expect = 7.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE M +FTVS+MHG
Sbjct: 270 DWLTEKMREANFTVSSMHG 288
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 115 bits (276), Expect = 1e-24
Identities = 53/84 (63%), Positives = 69/84 (82%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RRA+ A I+L VLDEAD+ML GFKDQIH++F L +VQ ILLSATMP VLE ++ F
Sbjct: 119 RRAVSAKAIRLLVLDEADQMLGNGFKDQIHEIFCKLPTNVQAILLSATMPAHVLEATKMF 178
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
M+DPV+IL+++EELT+EGI+QFY+
Sbjct: 179 MQDPVKILIKREELTMEGIQQFYI 202
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 126
GKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 70 GKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 LYRRKSLPWKVLNNFTC-IELEEWKLETLCDLYDTLSIAQAVIFCNTRRK 606
L +R+ L + + F E EE KLE+LC LY TL+I QAVIF NTR+K
Sbjct: 186 LIKREELTMEGIQQFYIKTETEEKKLESLCGLYSTLTITQAVIFVNTRKK 235
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 113 bits (273), Expect = 3e-24
Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 3/205 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT S+S+L D S+++ Q LIL TR+L ++ +++ALG LN HAC G ++
Sbjct: 71 GKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGKFLNVSIHACSEGNSI 130
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
++DI ++ GV +V+GTP RV++++ + L + + + ++S++
Sbjct: 131 QDDISVVQQGVQIVLGTPDRVFELVQRKEISFAHLKMIILDEADEML--IDESKSLVYCI 188
Query: 361 FCQLMFKSYYSLLPCLMM--YWKYLDAL*EILYAYLYRRKSLPWKVLNNFTC-IELEEWK 531
F L K Y L+ + +++ + +R L + + F ++ E+WK
Sbjct: 189 FKYLPPKPQYVLVTATLSQDILDFIEKFFNNPLVIMDKRNELTLEGIQQFFIQVDKEDWK 248
Query: 532 LETLCDLYDTLSIAQAVIFCNTRRK 606
ETLCDLY+ SI Q+VIFC T++K
Sbjct: 249 FETLCDLYEIASITQSVIFCQTKQK 273
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 107 bits (256), Expect = 4e-22
Identities = 48/84 (57%), Positives = 67/84 (79%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L + +KLF+LDEADEML RGFKDQI+ +F+ L D+QV L SATM ++LE+++ F
Sbjct: 236 KKTLVTDHLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQVALFSATMAPEILEITKQF 295
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
MRDP ILV+ ++LTL+GIKQFY+
Sbjct: 296 MRDPATILVKNDDLTLDGIKQFYI 319
Score = 84.2 bits (199), Expect = 3e-15
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +1
Query: 109 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSN 288
+KV++ LG+ L +AC GGT+ +ED ++L GV VVVGTPGRV D+I + ++
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKTLV---TD 242
Query: 289 FLFLMKLMKCCPEVSRTRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAY 459
L L L + + R ++ Q + L M + L+ + +
Sbjct: 243 HLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQVALFSATMAPEILEITKQFMRDPATI 302
Query: 460 LYRRKSLPWKVLNNF-TCIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
L + L + F ++ EEWK +TL +LY+ + IAQA+I+CNT+++V
Sbjct: 303 LVKNDDLTLDGIKQFYIALDKEEWKFDTLVELYNNIEIAQAIIYCNTKKRV 353
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALGDHL 141
GKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG +L
Sbjct: 83 GKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILGVNL 130
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 104 bits (249), Expect = 3e-21
Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G +LN + CIGGT+
Sbjct: 105 GKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTST 164
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
+E + + GVH+++ TPGR+ DM ++ + F+ L+ + + + + S +
Sbjct: 165 QETREKCKQGVHIIIATPGRLIDM---MKNKYLDATFMRLLVVDEADQMLDQGFSDNFAE 221
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL----YAYLYRRKSLPWKVLNNF-TCIELEE 525
+++ L + ++ + L L +++ L + + F I+ E+
Sbjct: 222 ILKMVPGDIQIALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQED 281
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
K + L +LY L+++Q+++FCN+++ V
Sbjct: 282 QKFKVLVELYKNLTVSQSILFCNSKKTV 309
Score = 91.1 bits (216), Expect = 3e-17
Identities = 40/82 (48%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L A ++L V+DEAD+ML +GF D ++ K++ D+Q+ L SAT P +++E+S+ F+RD
Sbjct: 194 LDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSKQFLRD 253
Query: 447 -PVRILVQKEELTLEGIKQFYM 509
+ILV+KE+LTLEGI+QFY+
Sbjct: 254 GTAKILVKKEQLTLEGIRQFYI 275
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 101 bits (242), Expect = 2e-20
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
G T T ILQ++D + ECQAL+L PT +LA + Q V+ LG L+AK HA GGT+
Sbjct: 95 GTTVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAKAHAFCGGTSA 154
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMK----LMKCCPEVSRTRSM 348
ED + L +GV V VGTP V M+ P L + L ++
Sbjct: 155 HEDQQILSTGVQVAVGTPCHVLGMLQGRALCPDHIRMFVLDEADEVLRGFKDQIHGIIQF 214
Query: 349 MSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEEW 528
+ ++ Q F S L M KY++ EI+ + + V + +E E+
Sbjct: 215 LPTK-TQFGFFSASMSHEALEMCRKYMNKPVEIIVPRDEELEGI--NVKQFYVNVEKEDC 271
Query: 529 KLETLCDLYDTLSIAQAVIFCNTR 600
KL+ LC L+DT+ I +++IF NTR
Sbjct: 272 KLDKLCGLFDTMEITRSIIFVNTR 295
Score = 76.6 bits (180), Expect = 6e-13
Identities = 43/86 (50%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
RAL + I++FVLDEADE+L RGFKDQIH + + L Q SA+M + LE+ R +M
Sbjct: 182 RALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFSASMSHEALEMCRKYM 240
Query: 441 RDPVRILVQKEELTLEGI--KQFYMH 512
PV I+V ++E LEGI KQFY++
Sbjct: 241 NKPVEIIVPRDE-ELEGINVKQFYVN 265
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 101 bits (242), Expect = 2e-20
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I L+++ + + QALI+ PTRELA Q +VV LG H C GGTN+
Sbjct: 95 GKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNL 154
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSN-FLFLMKLMKCCPEVSRTRSMMSS 357
R+DI +L VH++VGTPGRV D L R + S+ LF+M + +SR +
Sbjct: 155 RDDILRLNETVHILVGTPGRVLD--LASRKVADLSDCSLFIMD--EADKMLSRDFKTIIE 210
Query: 358 RFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYA--YLYRRKSLPWKVLNNFTCIELEEWK 531
+ + ++ SLL + + + L+ + + L K + + E K
Sbjct: 211 QILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK 270
Query: 532 LETLCDLYDTLSIAQAVIFCNTRRKVGL 615
L L L+ L I QA+IFCN+ +V L
Sbjct: 271 LHCLNTLFSKLQINQAIIFCNSTNRVEL 298
Score = 59.7 bits (138), Expect = 8e-08
Identities = 34/84 (40%), Positives = 46/84 (54%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
+R+ + LF++DEAD+MLSR FK I + L Q +L SAT P V E
Sbjct: 180 SRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 239
Query: 435 FMRDPVRILVQKEELTLEGIKQFY 506
+ P I + EELTL+GI Q+Y
Sbjct: 240 HLHKPYEINLM-EELTLKGITQYY 262
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 91.5 bits (217), Expect = 2e-17
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L K+ VLDEAD+MLS F +Q++D+ + DVQ++L SAT+ + + FM D
Sbjct: 233 LRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQILLFSATISQSIFHIMNTFMND 292
Query: 447 PVRILVQKEELTLEGIKQFYM 509
P RIL++KE+LTLEGIKQFY+
Sbjct: 293 PFRILIKKEQLTLEGIKQFYV 313
Score = 66.1 bits (154), Expect = 9e-10
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 9/212 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC-IGGTN 177
GKT FSI +L +ID S + QAL+LAPTRELA QI V +G + A IGG
Sbjct: 142 GKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQ 201
Query: 178 VREDIR-QLESGVHVVVGTPGRVYDMIL-----VVRFMPTPSNFLFLMKLMKCCPEVSRT 339
D + + S H+ + TPGR D+I+ V F + M +V+
Sbjct: 202 RVVDAQARAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDI 261
Query: 340 RSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIEL 519
L+F + S + ++ + L +++ L + + F +++
Sbjct: 262 MEYFPEDVQILLFSATIS-----QSIFHIMNTFMNDPFRILIKKEQLTLEGIKQF-YVDV 315
Query: 520 EEW--KLETLCDLYDTLSIAQAVIFCNTRRKV 609
+E K + L D+Y ++SI +A+IF N++ V
Sbjct: 316 QETSNKFDCLLDIYGSVSIQKAIIFANSKNAV 347
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 89.0 bits (211), Expect = 1e-16
Identities = 59/137 (43%), Positives = 79/137 (57%)
Frame = +3
Query: 354 FKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYMH*IRRMEA 533
F+ LS ++QV+LLSATMP +VLEV++ FMRDPVRILV+KEELTLEGIKQFY++ R
Sbjct: 160 FQKLSTNIQVVLLSATMPAEVLEVTKKFMRDPVRILVKKEELTLEGIKQFYINVEREEWK 219
Query: 534 GNSV*PV*YTVYCTSCNFLQHPSQGGIGSLNLCICVTLLYLLCMGDMDQREPEVIMKAVS 713
+++ + T+ T + + GDMDQ+E +VIM+
Sbjct: 220 LDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFR 279
Query: 714 YWLLLVS*FTTDLWARG 764
V TTDL ARG
Sbjct: 280 SGSSRVL-ITTDLLARG 295
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = +1
Query: 460 LYRRKSLPWKVLNNFTC-IELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
L +++ L + + F +E EEWKL+TLCDLY+TL+I QAVIF NTRRKV
Sbjct: 195 LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKV 245
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQ 105
GKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 84 GKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 512 LN*KNGSWKLCVTCMIH---CLLHKL*FSATPVARWDWLTESMHLRDFTVSAMHG 667
+N + WKL C ++ + + F T + DWLTE MH RDFTVSA+HG
Sbjct: 211 INVEREEWKLDTLCDLYETLTITQAVIFLNTR-RKVDWLTEKMHARDFTVSALHG 264
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 87.0 bits (206), Expect = 5e-16
Identities = 68/212 (32%), Positives = 108/212 (50%), Gaps = 7/212 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H+ N + GGT
Sbjct: 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTT 144
Query: 178 VREDIRQLESGVHVVVGTPGRVYDM-ILVVRFMPTPSNFLF--LMKLMK--CCPEVSRTR 342
+R+DI +L+ VH++VGTPGR+ D+ + + F+ KL+ P + +T
Sbjct: 145 LRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTL 204
Query: 343 SMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAY-LYRRKSLPWKVLNNFTCIEL 519
++ ++F + + P + +K D ++ Y + L K + +
Sbjct: 205 ALCPQERQVMLFSATF---PWTVKEFK--DQ--HMVQPYEINLMDELTLKGVTQYYAYVE 257
Query: 520 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
E K+ L L+ L I Q++IFCN+ +V L
Sbjct: 258 ESQKVHCLNTLFSKLQINQSIIFCNSTNRVEL 289
Score = 53.2 bits (122), Expect = 7e-06
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +FV+DEAD++LS F I + + QV+L SAT P V E M P
Sbjct: 178 NKCGVFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVKEFKDQHMVQPYE 237
Query: 456 ILVQKEELTLEGIKQFYMH 512
I + +ELTL+G+ Q+Y +
Sbjct: 238 INLM-DELTLKGVTQYYAY 255
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 85.8 bits (203), Expect = 1e-15
Identities = 37/84 (44%), Positives = 58/84 (69%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R LH +++ +F+LDEAD+ML GF++ I D+F+ D Q IL SATMP +L+++R F
Sbjct: 141 RGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILDITRRF 200
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
RDP + + ++ELT+ I+Q Y+
Sbjct: 201 QRDPQFVKITRKELTVPQIEQTYI 224
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F I I++++D + QAL+L+PTRELA Q + L + GG
Sbjct: 54 GKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQP 113
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +R L+ V VV+GTPGRV D I
Sbjct: 114 IERQLRALKGTVQVVIGTPGRVIDHI 139
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 83.0 bits (196), Expect = 7e-15
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GK+ + I +L++ID QAL+L PTRELA Q+ ++ I + HL K A GGTN
Sbjct: 138 GKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTN 197
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+R+DI +L+ VHVV+ TPGR+ D++
Sbjct: 198 LRDDIMRLDETVHVVIATPGRILDLM 223
Score = 49.6 bits (113), Expect = 8e-05
Identities = 27/79 (34%), Positives = 45/79 (56%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
V +AD++LS+ F + D+ L+ + Q++L SAT P V + ++ P I + E
Sbjct: 264 VSPQADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLM-E 322
Query: 474 ELTLEGIKQFYMH*IRRME 530
ELTL+GI Q+Y + R +
Sbjct: 323 ELTLKGITQYYAYVTERQK 341
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 81.8 bits (193), Expect = 2e-14
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 8/215 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + I Q+ SI Q LIL PTREL+ QI+ V L + +C GG +
Sbjct: 59 GKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNIYTKNSITSCHGGRWL 118
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILV-------VRFMPTPSNFLFLMKLMKCCPEVSRT 339
ED++ L+ H +VGTPGRV ++ + +R + + K K ++
Sbjct: 119 GEDLKNLKKNFHGIVGTPGRVLHLLQIGSLAITKIRTFVLDEADILMNKNFKI--DIFNI 176
Query: 340 RSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPW-KVLNNFTCIE 516
++S+ Q++ S L L K+L L ++ L R++ + K+ + +
Sbjct: 177 YRYLNSK-VQIIICSATIPLYTLQAASKFL--LDPVM--ILMRKEEINIDKIKQFYISVF 231
Query: 517 LEEWKLETLCDLYDTLSIAQAVIFCNTRRKVGLAH 621
+EE KL L D+++TL + Q +IFCNT RK H
Sbjct: 232 IEENKLLALLDIFETLLVGQVLIFCNTIRKANWIH 266
Score = 77.4 bits (182), Expect = 4e-13
Identities = 35/82 (42%), Positives = 59/82 (71%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
+L I+ FVLDEAD ++++ FK I ++++ L++ VQ+I+ SAT+P L+ + F+
Sbjct: 147 SLAITKIRTFVLDEADILMNKNFKIDIFNIYRYLNSKVQIIICSATIPLYTLQAASKFLL 206
Query: 444 DPVRILVQKEELTLEGIKQFYM 509
DPV IL++KEE+ ++ IKQFY+
Sbjct: 207 DPVMILMRKEEINIDKIKQFYI 228
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 81.0 bits (191), Expect = 3e-14
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG +L + A GG +
Sbjct: 51 GKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAI 109
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSRTRS 345
IR L GV V+VGTPGR+ D I F + L M M ++ +
Sbjct: 110 ERQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILN 169
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+++R L+F + P + K+L + + R K++P + E E
Sbjct: 170 TLTNRQQTLLFSATLP-APIKTIIKKFLGGYKTV--KLVGREKTVPAIRQVYYELPETE- 225
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
K+E L + ++ QA++FC T+++V
Sbjct: 226 -KIEGLVSILNSELPIQAIVFCRTKKRV 252
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 81.0 bits (191), Expect = 3e-14
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L + A GG +
Sbjct: 50 GKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGES 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSRTR 342
+ IR L++G H+VVGTPGR+ D + + + + L M M ++
Sbjct: 110 IERQIRDLKAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELIL 169
Query: 343 SMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELE 522
+ + ++F + +L P ++ K EI+ RK L + F +
Sbjct: 170 TRLPEERQTVLFSA--TLAPPILALAKRFQNNPEII---KIERKELTISTVEQFYYLVKN 224
Query: 523 EWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
K E + + D ++ +IFCNT+RKV
Sbjct: 225 SQKTEIVTQIIDLNNLQLMLIFCNTKRKV 253
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/83 (37%), Positives = 54/83 (65%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR L+A+ + +LDEADEML+ GF++ I + L + Q +L SAT+ +L +++ F
Sbjct: 137 RRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATLAPPILALAKRF 196
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+P I ++++ELT+ ++QFY
Sbjct: 197 QNNPEIIKIERKELTISTVEQFY 219
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 81.0 bits (191), Expect = 3e-14
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G ++ K A GG ++
Sbjct: 53 GKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSRTRS 345
I QL GVHV+V TPGR+ D I + + L M M ++ R S
Sbjct: 112 GNQIAQLRRGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILS 171
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+ R ++F + S P L + KY+ +K P ++ F EE
Sbjct: 172 HVPERRQTMLFSATVS-KPILRIARKYM----RNPQVMRVEKKHSP--KIDEFYFKTREE 224
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
K+E L + + +I +IFCNT+R+V
Sbjct: 225 DKVELLDWILSSNNIRMGLIFCNTKRRV 252
Score = 51.2 bits (117), Expect = 3e-05
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
I VLDEADEML+ GF D I + + Q +L SAT+ +L ++R +MR+P +
Sbjct: 146 ISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATVSKPILRIARKYMRNPQVMR 205
Query: 462 VQKE 473
V+K+
Sbjct: 206 VEKK 209
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 80.6 bits (190), Expect = 4e-14
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I IL++I R AL++ PTRELA Q+ + AL H + A GG ++
Sbjct: 69 GKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASM 128
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
E +++LE+G ++VGTPGR+YD I
Sbjct: 129 GEQLQKLEAGAEIIVGTPGRIYDHI 153
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR L + + LDEADEML+ GF +++ + L D Q +L SAT+P D+ ++ R +
Sbjct: 155 RRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFSATVPADIEQIIRDY 214
Query: 438 MRDPVRILVQKEELTLEGI 494
+ DP IL+ +E ++E I
Sbjct: 215 LTDPETILLSGDEYSVENI 233
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 80.2 bits (189), Expect = 5e-14
Identities = 41/85 (48%), Positives = 52/85 (61%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++ GG ++
Sbjct: 52 GKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
IR+L GV +VVGTPGR+ D I
Sbjct: 112 DRQIRELRRGVQIVVGTPGRILDHI 136
Score = 67.3 bits (157), Expect = 4e-10
Identities = 28/76 (36%), Positives = 53/76 (69%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
+RR + + VLDEADEML+ GF D + ++ K +S + +++L SAT+PD ++++++
Sbjct: 137 SRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSIMKLAKN 196
Query: 435 FMRDPVRILVQKEELT 482
+MR+ I V++++LT
Sbjct: 197 YMREYDIIKVKRQQLT 212
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 79.8 bits (188), Expect = 7e-14
Identities = 35/86 (40%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN-AKCHACIGGTN 177
GK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H+ AK A GGTN
Sbjct: 130 GKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTN 189
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+R+D+ +L+ HVV+ TPGR+ D+I
Sbjct: 190 LRDDVMRLDDTGHVVIATPGRILDLI 215
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+++ VLDEAD++LS+ F + L + Q++L SAT P V + ++ P I
Sbjct: 225 VQMVVLDEADKLLSQDFVQIMEAFILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEIN 284
Query: 462 VQKEELTLEG 491
+ EELTL+G
Sbjct: 285 LM-EELTLKG 293
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 79.4 bits (187), Expect = 9e-14
Identities = 37/83 (44%), Positives = 51/83 (61%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + I++++ R QAL+L PTRELA Q+ + + +G H K A GG ++
Sbjct: 55 GKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSI 114
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
IR L GV VV+GTPGR+ D
Sbjct: 115 ERQIRSLRFGVDVVIGTPGRILD 137
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + +++ VLDEADEML GF + I + + A+ Q +L SATMP ++ ++ +
Sbjct: 141 RSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSATMPPEIRRLAGRY 200
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
MRDP+ I V ++LT+ I Q++
Sbjct: 201 MRDPITISVTPQQLTVPQIDQYF 223
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 79.0 bits (186), Expect = 1e-13
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 6/209 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +++++ T R QALIL PTRELA Q+ + L H + GG ++
Sbjct: 55 GKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSI 113
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSRTRS 345
I+ L+ GV VV+GTPGR+ D + + N + L M M ++
Sbjct: 114 VHQIKALKQGVQVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILR 173
Query: 346 MMSSRFCQLMFKSYYSLLPCL-MMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELE 522
+ + L+F + ++ P + + KY++ R+ + ++ F LE
Sbjct: 174 QVKNERQTLLFSA--TMPPAIKKLSRKYMND----PQTVSINRREVTAPSIDQFYYKVLE 227
Query: 523 EWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
KL++LC + D+ I ++FC T++ V
Sbjct: 228 RNKLDSLCRIIDSEQIDLGILFCRTKKGV 256
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/85 (40%), Positives = 50/85 (58%)
Frame = +3
Query: 270 HANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDP 449
H NT+ +LDEADEML GF D I + + + + Q +L SATMP + ++SR +M DP
Sbjct: 147 HVNTV---ILDEADEMLDMGFIDDIESILRQVKNERQTLLFSATMPPAIKKLSRKYMNDP 203
Query: 450 VRILVQKEELTLEGIKQFYMH*IRR 524
+ + + E+T I QFY + R
Sbjct: 204 QTVSINRREVTAPSIDQFYYKVLER 228
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 79.0 bits (186), Expect = 1e-13
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K + ++ A GG
Sbjct: 51 GKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKK 110
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ E I++LE+ H++V TPGR+ D+I
Sbjct: 111 IEEQIKKLETPKHILVATPGRLLDLI 136
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+A++ + +K +LDEADEML+ GF I + KI + +L ++T+ ++ + R +
Sbjct: 138 RKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTARKLLFTSTLGSELKLIIREY 197
Query: 438 M-RDPVRILVQKEELTLEGIKQFYM 509
+ D I ++ +E I+ Y+
Sbjct: 198 LGTDIEEIRIKPQEYVNRNIEHQYL 222
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 78.6 bits (185), Expect = 2e-13
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G + + + GG +
Sbjct: 58 GKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGAD 117
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+R+ ++ L G H+VV TPGR+ D I
Sbjct: 118 MRQQLKSLREGTHIVVATPGRLLDHI 143
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR++ I VLDEADEML GF D + + + +V L SATMP V +++
Sbjct: 145 RRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFSATMPKRVRDIANKH 204
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+ +P I V T E I+Q Y
Sbjct: 205 LSNPAEISVAAAATTNENIEQCY 227
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG ++ K GG +
Sbjct: 75 GKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGAS 134
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ + +R L+SG H+VVGTPGRV D+I
Sbjct: 135 ILDQMRALKSGAHIVVGTPGRVKDLI 160
Score = 59.7 bits (138), Expect = 8e-08
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
TR LH + F+LDEADEML GF D + + + Q +L SATMP V E+
Sbjct: 161 TRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVER 220
Query: 435 FMRDPVRILVQKEELTLEGIKQFY 506
F+R+P + V T+ ++Q Y
Sbjct: 221 FLRNPECVDVAGSNQTVAKVEQQY 244
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA FS+ IL+++D + QA++L PTRELA Q+ + + + A GG ++
Sbjct: 52 GKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ QL+ GVH+VVGTPGRV D++
Sbjct: 112 DRQMLQLKRGVHIVVGTPGRVIDLL 136
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/81 (40%), Positives = 44/81 (54%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + +K FVLDEADEMLS GF D + + D Q L SATMP + + F
Sbjct: 138 RGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMPPSIRMLVNKF 197
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+R PV + V++ + T I Q
Sbjct: 198 LRSPVTVTVEQPKATPNKINQ 218
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 77.8 bits (183), Expect = 3e-13
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDT--SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA FSI IL+Q+D+ R+ QA+++ PTRELA Q+ L + + GG
Sbjct: 93 GKTAAFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGK 152
Query: 175 NVREDIRQLESGVHVVVGTPGRVYD 249
N+ +RQLE+G +VVGTPGRV+D
Sbjct: 153 NMNRQLRQLENGTQLVVGTPGRVHD 177
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L N + VLDEAD ML GF+ QI + + + Q +LLSAT+P V ++ +
Sbjct: 181 RGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLSATLPPVVRRLAESY 240
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M +PV I ++E+ ++ I+Q Y
Sbjct: 241 MHEPVVIDCCRDEMAVDTIEQRY 263
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 77.8 bits (183), Expect = 3e-13
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG + GG +
Sbjct: 94 GKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASY 153
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
R I ++ G H+VV TPGR+ D +
Sbjct: 154 RTQIDGIKRGAHIVVATPGRLVDFL 178
Score = 48.0 bits (109), Expect = 3e-04
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSAD--------VQVILLSATMPDD 413
++ + ++K VLDEADEMLS GFK+ + + D + L SATM +
Sbjct: 180 QKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVRAACRTWLFSATMSSE 239
Query: 414 VLEVSRCFMRDPVRILVQKEELTLEGIKQFY 506
V ++ ++ +P + V K T + I+Q Y
Sbjct: 240 VRRLTSTYLENPETVSVNKVGGTADTIEQVY 270
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 77.0 bits (181), Expect = 5e-13
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +L ID + RE QALILAPTRELAQQI + + HL GG N
Sbjct: 63 GKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGAN 122
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ IR + G ++V TPGR+ D++
Sbjct: 123 IMNQIRDIRRGAQIIVATPGRLMDLM 148
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR + + +K VLDEADEML+ GFK+ I + + L SATM ++ + +
Sbjct: 150 RREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFSATMAREIKRIVDTY 209
Query: 438 MRDPVRILVQKEELTLEGIK 497
M P + + + + + I+
Sbjct: 210 MVQPEEVRINPKNIVNKNIE 229
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 77.0 bits (181), Expect = 5e-13
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGDHLN K +
Sbjct: 61 GKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHLNVKIY 112
Score = 70.1 bits (164), Expect = 6e-11
Identities = 30/58 (51%), Positives = 49/58 (84%)
Frame = +3
Query: 339 QIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYMH 512
+I+++F++L +QV + SATMP +VLE+++ F+ PVRILV++EELTLEGI+QF+++
Sbjct: 110 KIYEIFQLLPERIQVGVFSATMPPEVLEITKKFINKPVRILVKREELTLEGIRQFHVN 167
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 76.6 bits (180), Expect = 6e-13
Identities = 38/85 (44%), Positives = 53/85 (62%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I IL +D SI Q L++APTRELA QI + LG + +K +GG +
Sbjct: 50 GKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSY 109
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ L SGV++VV TPGR+ D++
Sbjct: 110 EKQKAALNSGVNIVVATPGRLEDLL 134
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
IK F LDEADE+L GF ++I + L Q +AT + ++S+ + I
Sbjct: 144 IKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFFTATFDEKTKKLSQEITNEAKMIS 203
Query: 462 VQKEELTLEGIKQFYM 509
+ T E I Q ++
Sbjct: 204 MSSGLETTEKIDQNFV 219
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 76.2 bits (179), Expect = 8e-13
Identities = 33/85 (38%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + +L ++DT Q +++APTRELA Q+ + + +G H + GG ++
Sbjct: 51 GKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
IR L+ H++VGTPGR+ D I
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHI 135
Score = 70.9 bits (166), Expect = 3e-11
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L ++ VLDEADEML+ GF + I + + Q +L SATMPD + ++ F
Sbjct: 137 RKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERF 196
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
M +P I V+ +E+T+ I+QFY+
Sbjct: 197 MTEPQHIKVKAKEVTMPNIQQFYL 220
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +LQ ID S + Q LI+APTREL QI + H+ + A GG+N
Sbjct: 51 GKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSN 110
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
++E R++ G +VV TPGR+ DM+
Sbjct: 111 IQEQAREISRGAQIVVATPGRMQDMM 136
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR + + VLDEADEML+ GF + I ++ D L SATMP +V +++ F
Sbjct: 138 RRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSATMPREVARIAKEF 197
Query: 438 MRDPVRILV 464
M DP+ I V
Sbjct: 198 MHDPLEITV 206
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 75.8 bits (178), Expect = 1e-12
Identities = 31/84 (36%), Positives = 57/84 (67%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L + + L VLDEAD+ML GF++ I ++ + + Q ++LSAT P ++L++SR F
Sbjct: 140 RKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSATFPPEILDISRRF 199
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
++P+ + + +ELT+ I+Q+Y+
Sbjct: 200 QKNPIDVKMVHQELTVPQIEQYYI 223
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F I ++ + R Q ++L P+RELA Q+ + L H GG
Sbjct: 53 GKTAAFGIPAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQP 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ I+ L GV +++GTPGRV D I
Sbjct: 113 IERQIKALSRGVQIIIGTPGRVIDHI 138
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTN 177
GKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G D + GG +
Sbjct: 64 GKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQS 123
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+QLE G VVVGTPGR+ D
Sbjct: 124 YGPQFQQLERGAQVVVGTPGRLMD 147
Score = 56.4 bits (130), Expect = 7e-07
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L + +++ VLDEADEML+ GF + I + + Q+ L SATMP + +++ F
Sbjct: 151 RKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRF 210
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
++DP I V + I Q+
Sbjct: 211 LKDPEHIKVAAVKKAKANITQY 232
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/85 (43%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + +L++I R +ALIL PTRELA Q+ + L H K A GG ++
Sbjct: 78 GKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASM 137
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
++ LE G ++VGTPGRV+D I
Sbjct: 138 KQQEDALEEGTPIIVGTPGRVFDHI 162
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
VLDEADEML++GF +++ + L QV+L SAT+P D+ + + + +L+ +
Sbjct: 176 VLDEADEMLNQGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSGD 235
Query: 474 ELTLEGI 494
T+E I
Sbjct: 236 VFTVEHI 242
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 75.4 bits (177), Expect = 1e-12
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G +C A G ++
Sbjct: 52 GKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
++ I +L+ VH+VV TPGR+ D I
Sbjct: 112 KDQIAELKQRVHIVVATPGRILDHI 136
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R ++ +K V+DEAD+M ++GF +Q+ + L + V L SAT+ +++ + +
Sbjct: 138 RGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKYICEKY 197
Query: 438 MRDPVRILVQKEE 476
M D I +++ E
Sbjct: 198 MLDYSVINIEENE 210
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 75.4 bits (177), Expect = 1e-12
Identities = 39/85 (45%), Positives = 50/85 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F+I ILQ++ ALIL PTRELA QI + ALG + KC +GG ++
Sbjct: 138 GKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSL 197
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
R+L HVVV TPGR+ D+I
Sbjct: 198 IHQARELSERPHVVVATPGRLADLI 222
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDP--VR 455
I+ FVLDEAD ML + DQ+ +F+ +S Q +LLSAT+ +++ + R R P
Sbjct: 236 IQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFE 295
Query: 456 ILVQKEELTLEGIKQFYM 509
+ +E T++ ++Q Y+
Sbjct: 296 DKGKDDESTVDRLEQKYV 313
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 74.9 bits (176), Expect = 2e-12
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L N I VLDEADEML+ GF D + ++ K L D Q +L SATMP + +++R +
Sbjct: 141 RKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPPQIKKLARNY 200
Query: 438 MR-DPVRILVQKEELTLEGIKQFY 506
M+ D I ++K LT+ I+QFY
Sbjct: 201 MKEDTKHIAIKKSSLTVSKIEQFY 224
Score = 74.5 bits (175), Expect = 3e-12
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 7/210 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG H GG
Sbjct: 53 GKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQ 112
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSRT 339
+ IR L++GV +VVGTPGRV D+I FL L M M ++
Sbjct: 113 PIDRQIRALKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEI 172
Query: 340 RSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIEL 519
+ + L+F + ++ P + + + + E ++ SL + F
Sbjct: 173 VKSLKTDRQTLLFSA--TMPPQIKKLAR--NYMKEDTKHIAIKKSSLTVSKIEQFYFEIK 228
Query: 520 EEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+ ETLC + D A+IFC T++ V
Sbjct: 229 HRDRFETLCRVLDFDEPNAAIIFCKTKKGV 258
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL HL + + GG
Sbjct: 54 GKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQP 113
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ L G VVVGTPGR+ D I
Sbjct: 114 IEPQASALRRGAQVVVGTPGRILDHI 139
Score = 69.7 bits (163), Expect = 7e-11
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L +++ VLDEADEML GF++ I + + VQ SATMPD +LE++R F
Sbjct: 141 RGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFFSATMPDGILELARRF 200
Query: 438 MRDPVRILVQKEELTLEGIKQ--FYMH*IRRMEA 533
+R+P + V + +LT+ +Q F + RR++A
Sbjct: 201 LREPELLRVTRRQLTVANTEQAWFEVRPFRRVDA 234
>UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9;
Bacteroidetes|Rep: ATP-independent RNA helicase -
Psychroflexus torquis ATCC 700755
Length = 443
Score = 74.9 bits (176), Expect = 2e-12
Identities = 67/206 (32%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT FS+ +L +D + Q LIL P+RELA QI++V+ +G K +A GG V
Sbjct: 46 GKTLAFSLPLLTILDPESPDVQVLILVPSRELAIQIEQVIRTMGS--GYKVNAVYGGRPV 103
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMS-- 354
+D +++ +++GTPGR+ D RF T L L + K EV M +
Sbjct: 104 SKDKIEIKHNPAILIGTPGRILDHFNSERFSKTSIQTLILDEFDKSL-EVGFEEEMKAII 162
Query: 355 SRFCQLMFKSYYSLLPCLMM-YWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEEWK 531
S+ L + S L + + LD + YL K P K L T I + K
Sbjct: 163 SQLPNLNKRVLTSATQSLSIPGFVRLDK--PSIVNYL--NKKTPSK-LTIKTVISPSQSK 217
Query: 532 LETLCDLYDTLSIAQAVIFCNTRRKV 609
L+TL DL L A ++FCN R +
Sbjct: 218 LKTLVDLVHHLGNAPGIVFCNLRDSI 243
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 74.9 bits (176), Expect = 2e-12
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG + + IGG ++
Sbjct: 147 GKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSM 206
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
E R L HV++ TPGR+ D
Sbjct: 207 MEQARDLMRKPHVIIATPGRLID 229
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 74.5 bits (175), Expect = 3e-12
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTN 177
GKTA F++ +L + +RE Q L+LAPTRELAQQ+ V + H N K + GG++
Sbjct: 55 GKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSD 114
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
R L+ G VVGTPGRV D I
Sbjct: 115 FGSQFRALKQGPQWVVGTPGRVMDHI 140
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L I+ VLDEADEML GF D + V + Q+ L SATMP + V+
Sbjct: 142 RGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQIKAVAEKH 201
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+R+P I ++ + T E I+Q Y
Sbjct: 202 LREPTEIRIKSKTATNESIEQKY 224
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 74.5 bits (175), Expect = 3e-12
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTN 177
GKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +H + A + GG
Sbjct: 53 GKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIP 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
++ I +L+ H++V TPGR+ D++
Sbjct: 113 IKPQIERLKEATHIIVATPGRLADLV 138
Score = 39.1 bits (87), Expect = 0.12
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R A+ +I F+LDEADEM++ K+ + + K + + L +AT+P + ++ + +
Sbjct: 140 REAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFTATLPGTLKQLIQNY 198
Query: 438 MRDPVRILVQKEELTL--EGIKQFYM 509
M P I ++ TL +GI Y+
Sbjct: 199 MA-PKVIQIEANMTTLGHQGIDHQYV 223
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 74.5 bits (175), Expect = 3e-12
Identities = 34/85 (40%), Positives = 56/85 (65%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA++ + +L I++S Q +IL P RELA QI + V + + +GGT++
Sbjct: 157 GKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSM 216
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
++DI ++ +GVHV+VGTPGR+ D++
Sbjct: 217 QDDIIRVSNGVHVMVGTPGRIVDLV 241
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V DEAD++L F + + + +L + Q++L SAT P V R +M++P+ I +
Sbjct: 253 ILVFDEADKLLDVTFGETVTKLLDLLPREKQMLLYSATFPYFVTGFIRRYMKNPLCINLM 312
Query: 468 KEELTLEGIKQFYMH 512
K EL G+KQFY +
Sbjct: 313 K-ELAPVGVKQFYTY 326
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 74.1 bits (174), Expect = 3e-12
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG L K A GG +
Sbjct: 96 GKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQS 155
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
RE LE+GV +VVGTPGR+ D +
Sbjct: 156 GREQADALENGVQIVVGTPGRLADFV 181
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + + +K VLDEAD+ML GF D+I V + L Q +L SAT P+ + +SR +
Sbjct: 183 RNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSATFPESIEHLSRKY 242
Query: 438 MRDPVRILVQKEELTL 485
R +++++ EE L
Sbjct: 243 QRHAQQVIIEDEEQNL 258
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 74.1 bits (174), Expect = 3e-12
Identities = 32/84 (38%), Positives = 52/84 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR + N + V+DEADEML+ GF D I + + ++ Q +L SATMP + ++ F
Sbjct: 138 RRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERF 197
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
M +P + V+ +E+T+ I+QFY+
Sbjct: 198 MTEPEHVKVKAKEMTVSNIQQFYL 221
Score = 70.9 bits (166), Expect = 3e-11
Identities = 33/85 (38%), Positives = 52/85 (61%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I ++++I+ QA+++APTRELA Q+ + + +G AK GG ++
Sbjct: 52 GKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
IR L+ +++VGTPGR+ D I
Sbjct: 112 GRQIRALKKNPNIIVGTPGRLLDHI 136
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATFSI L ++ + + + +I++PTRELA Q + + +LG A AC+GG ++
Sbjct: 69 GKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG----ANTRACVGGNSL 124
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
D++ L+ G+H V GTPGR+ ++
Sbjct: 125 GADVKALQKGIHCVSGTPGRILQLL 149
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/79 (40%), Positives = 51/79 (64%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
+ A ++ VLDEADEML+ FK I D+ + L Q ++++AT+ DV+E++ +R+
Sbjct: 154 IQAEKVQSVVLDEADEMLT-SFKSTIMDILQKL-PHAQKVIVTATVSADVVELATAHLRN 211
Query: 447 PVRILVQKEELTLEGIKQF 503
V I V ++ELTL GI Q+
Sbjct: 212 SVEIRVPRDELTLTGIDQY 230
Score = 40.3 bits (90), Expect = 0.051
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 511 IELEEWKLETLCDLYDTLSIAQAVIFCNTRRK 606
+E EEWK +TL D+Y +++I +AVIF N+ K
Sbjct: 234 VENEEWKFDTLIDIYQSIAIEKAVIFVNSVEK 265
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 73.3 bits (172), Expect = 6e-12
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHACIGGT 174
GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L + ++ IG
Sbjct: 52 GKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNA 111
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
NV+ I +L+ HV+VG+ GR+ ++I
Sbjct: 112 NVKRQIEKLKEKPHVIVGSSGRILELI 138
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ + A+TIK V+DE D++L I DV K D Q+++ SAT+ + L V++
Sbjct: 140 KKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQLMVFSATINEKTLNVAKGL 199
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M+D I + E I Y
Sbjct: 200 MKDAEFIKAKSENAINPNITHMY 222
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 73.3 bits (172), Expect = 6e-12
Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTN 177
GKTA F++ +L+++++ + Q L+LAPTRELA Q+ A H + K A GGT+
Sbjct: 120 GKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTD 179
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
R I L GV VVVGTPGRV D
Sbjct: 180 FRSQISTLRRGVDVVVGTPGRVMD 203
Score = 57.2 bits (132), Expect = 4e-07
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + + VLDEADEML GF D + + + L + QV+L SATMP ++ +S+ ++ D
Sbjct: 210 LDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRLSKRYLND 269
Query: 447 PVRILVQKEELTLEGIKQ 500
P + ++ ++ + I+Q
Sbjct: 270 PAEVTIKTKDQDGKLIRQ 287
>UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2;
Cryptosporidium|Rep: DEAD-box RNA helicase -
Cryptosporidium hominis
Length = 518
Score = 73.3 bits (172), Expect = 6e-12
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF++++L ++DT I Q + L PTRELA+Q Q VV LG +
Sbjct: 162 GKTATFALAMLGKVDTRIIHPQCMCLCPTRELARQNQDVVNELGKFTGITTWLVV----A 217
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
+ D G +++ TPG++ D + F P+ F+ LM + + E+ R+MM+S+
Sbjct: 218 QGDKYDKTIGSQIIICTPGKMQDFLKKRSF---PTEFMKLMVIDE-ADEMIDHRNMMASQ 273
Query: 361 FCQL--MFKSYYSLLPCLMMYWKYLDAL*EILYAYL----YRRKSLPWKVLNNFTCIELE 522
Q+ F+ +L Y + + E + +++ L + F I +
Sbjct: 274 VGQIRKFFRQNLQILLFSATYHEEVRLFAEKIVPNANKINVKKEELTLNTIQQFYVICND 333
Query: 523 EW-KLETLCDLYDTLSIAQAVIFCNTRR 603
+ KL L DLY +SI Q++IF NTR+
Sbjct: 334 DADKLSFLSDLYACMSIGQSIIFVNTRK 361
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 72.5 bits (170), Expect = 1e-11
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTN 177
GKTA F++ ILQ + I QALILAPTRELA Q+ + L + N GG
Sbjct: 55 GKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQE 114
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
++QL SG VVVGTPGR+ D I
Sbjct: 115 YGRQLKQLRSGAQVVVGTPGRILDHI 140
Score = 64.1 bits (149), Expect = 4e-09
Identities = 28/78 (35%), Positives = 48/78 (61%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +K F+LDEADEML GF + + + + L Q+ L SATMP + +++ ++ DP
Sbjct: 148 NNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPAS 207
Query: 456 ILVQKEELTLEGIKQFYM 509
I ++ E T++ I+Q ++
Sbjct: 208 IEIRMETATVKSIEQRFL 225
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 72.5 bits (170), Expect = 1e-11
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G + + + GG
Sbjct: 58 GKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQE 117
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
RE + L G V+VGTPGRV D
Sbjct: 118 YREQLSGLRRGAQVIVGTPGRVID 141
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R +L + + VLDEADEML GF D + V D Q + SAT+PD++ + +
Sbjct: 145 RGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFFSATLPDEISRIVNHY 204
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+ DP+RI ++ + T EGI+Q
Sbjct: 205 LVDPLRIAIETKTKTAEGIEQ 225
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 72.1 bits (169), Expect = 1e-11
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F + +LQQID R Q+LIL PTREL QI + +++ K GG++
Sbjct: 52 GKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSS 111
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ IR L+ GVH++V TPGR+ D++
Sbjct: 112 IDSQIRSLKRGVHIIVATPGRLLDLM 137
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/80 (27%), Positives = 46/80 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ + +T+ V+DEADEML+ GF D I+ + + + +L SATM ++ +S+ +
Sbjct: 139 RKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLLFSATMSPEIARISKNY 198
Query: 438 MRDPVRILVQKEELTLEGIK 497
+++ I + ++ + +K
Sbjct: 199 LQNAKEITIGRKNESTSNVK 218
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 71.7 bits (168), Expect = 2e-11
Identities = 36/85 (42%), Positives = 49/85 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L + IK VLDEADEML GFK + VF+ Q +L SATMP VLE++ +
Sbjct: 136 RKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLFSATMPKQVLEIANNY 195
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
+PV I+V K + I Q Y++
Sbjct: 196 QTNPVEIVVTKNVIEQNNISQHYVN 220
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTN 177
GKT F + ILQ ++T +++ QA+IL PT ELA QI + V +L I GG++
Sbjct: 50 GKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSH 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
++ I L +++VGTPGR+ D I
Sbjct: 110 IQRQIYALRKS-NIIVGTPGRIADHI 134
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 71.3 bits (167), Expect = 2e-11
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA F++ +L ++ +TS+ + ALI+APTRELA QI + V G +L +
Sbjct: 54 GKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTA 113
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI--LVVRFMPTPSNFL---FLMKLMKCC 321
GG N+ I L++GV ++V TPGR+ D++ V F T L M M
Sbjct: 114 VVFGGINIEPQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFL 173
Query: 322 PEVSRTRSMMSSRFCQLMFKSYYS 393
P++ R +++S + LMF + +S
Sbjct: 174 PDIKRVMALLSPQRQSLMFSATFS 197
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++A++ + ++ VLDEAD ML GF I V +LS Q ++ SAT ++ +++
Sbjct: 148 QKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSATFSGEIRKLADSL 207
Query: 438 MRDPVRILVQKEELTLEGI 494
++ PVRI + E I
Sbjct: 208 LKQPVRIEAAVQNTVNESI 226
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 71.3 bits (167), Expect = 2e-11
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA+F + IL++I+ + R QA+I+APTRELA QI + G + N IGG +
Sbjct: 50 GKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGAD 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+R+ I++L+ +VVGTPGRV D
Sbjct: 110 MRDQIKRLKDS-QIVVGTPGRVND 132
Score = 56.4 bits (130), Expect = 7e-07
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L + ++ +LDEADEML GFK++I +F+ +S DVQ+ L SAT V++++ +
Sbjct: 136 RKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQIGLFSATTSPKVMQIANDY 195
Query: 438 MRD 446
M +
Sbjct: 196 MNE 198
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I I+++++ QAL++APTRELA Q+ + + +G + GG ++
Sbjct: 51 GKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDI 110
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
IR L+ HV+VGTPGR+ D I
Sbjct: 111 ERQIRALKKHPHVIVGTPGRIIDHI 135
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
T R H +T+ VLDEADEML+ GF + I + + A+ Q +L SATMPD + ++
Sbjct: 139 TLRLEHVHTV---VLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAER 195
Query: 435 FMRDPVRILVQKEELTLEGIKQFYM 509
FM +P + V+ +E+T+ I+Q+Y+
Sbjct: 196 FMNEPELVKVKAKEMTVPNIQQYYL 220
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/85 (37%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT +++ +L++I + QA+ILAP+REL QI +V+ + + IGG NV
Sbjct: 53 GKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANV 112
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
++ + +L+ H++VGTPGRV+++I
Sbjct: 113 KKQVEKLKKHPHIIVGTPGRVFELI 137
Score = 39.9 bits (89), Expect = 0.068
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+ L + +K VLDE D+++ ++ + + K D Q++ SAT+ + +V R
Sbjct: 140 KKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLRELA 199
Query: 441 RDPVRILVQKEELTLEGIKQFYM 509
++P + VQ+ + +K Y+
Sbjct: 200 QEPEVLKVQRSKAEAGKVKHQYL 222
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R ++H + IK+ VLDEADEML GF++ + + K AD Q I+ SATM DDVL + + F
Sbjct: 145 RGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIMFSATMTDDVLTLMKKF 204
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
P I V ++L+ I+Q Y
Sbjct: 205 QNHPQIIDVTHQKLSAPKIEQIY 227
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F+I ++ ++ + QALIL PTREL Q+ + L + N + GG
Sbjct: 58 GKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQE 117
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ +R L +V+ TPGR+ D
Sbjct: 118 IERQLRALRKNPQIVIATPGRMMD 141
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ ++QQ I R +A+IL+PTRELA QI + ++ G L I
Sbjct: 152 GKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAI 211
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG +R+ +R L GV ++V TPGR+ D++
Sbjct: 212 GGAPIRKQMRDLSKGVDILVATPGRLEDLV 241
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L + K VLDEAD+ML GF + + ++ D Q +L SATM ++ +++ +
Sbjct: 243 QKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFSATMSKEIKKLTETY 302
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
+ DPV++ V E T++ I+Q MH
Sbjct: 303 LTDPVQVSVTPENSTVDKIEQSLMH 327
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 70.1 bits (164), Expect = 6e-11
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG + K + IGG
Sbjct: 73 GKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVA 132
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ D ++L S H+ +G PGRV +I
Sbjct: 133 MDIDRKKL-SNCHIAIGAPGRVKHLI 157
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + ++LFVLDEAD+++ F+ I+ ++ L + QVI SAT P D+ +M+
Sbjct: 162 LKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVISSSATYPGDLEIFLESYMQS 221
Query: 447 PVRILVQKEELTLEGIKQF 503
P+ + L G++QF
Sbjct: 222 PILSSADNDGPILVGLRQF 240
>UniRef50_UPI0000E23613 Cluster: PREDICTED: similar to eukaryotic
initiation factor 4AI; n=1; Pan troglodytes|Rep:
PREDICTED: similar to eukaryotic initiation factor 4AI -
Pan troglodytes
Length = 151
Score = 70.1 bits (164), Expect = 6e-11
Identities = 33/54 (61%), Positives = 43/54 (79%)
Frame = +3
Query: 351 VFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYMH 512
+F + AD V+LLSA MP DVLEV++ FMRDP+ ILV+KEELTLEG+ FY++
Sbjct: 96 MFVLDEADEMVVLLSAIMPSDVLEVTKKFMRDPIWILVRKEELTLEGVCSFYVN 149
Score = 33.1 bits (72), Expect(2) = 0.004
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQAL 72
GK ATF+ISILQQI+ ++ QAL
Sbjct: 40 GKMATFAISILQQIELDLKATQAL 63
Score = 30.3 bits (65), Expect(2) = 0.004
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 190 IRQLESGVHVVVGTPGRVYDMI 255
++Q H++VGTPG V+DM+
Sbjct: 63 LKQQMEAPHIIVGTPGHVFDML 84
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 70.1 bits (164), Expect = 6e-11
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G + + H IGGT
Sbjct: 15 GKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEGLRSHVFIGGTL 74
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
D ++L+ H+ VGTPGR+ +I
Sbjct: 75 FGPDRQKLKK-CHIAVGTPGRIKQLI 99
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/81 (39%), Positives = 55/81 (67%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L TI+LFVLDEAD++L F++Q++ ++ LS + Q++ LSAT P+ + + +MR+
Sbjct: 104 LKTGTIRLFVLDEADKLLDDTFQEQVNWIYNHLSDNKQMLALSATYPEYLAKHLTKYMRE 163
Query: 447 PVRILVQKEELTLEGIKQFYM 509
P+ + + ++L L GIKQ Y+
Sbjct: 164 PMFVRLNPKDLALRGIKQLYV 184
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 6/89 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT + +++ + + I + ALI+APTRELA Q+Q+ + L +H + + +C
Sbjct: 48 GKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAWLYEHADGRVVSC 107
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYD 249
+GG + R + R+L +G H+VVGTPGR+ D
Sbjct: 108 VGGMDPRREQRELAAGAHIVVGTPGRLCD 136
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + +K VLDEADEML+ GF++ + + + + +L SAT P ++ +++ +
Sbjct: 140 RGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTLLFSATFPRGIVALAKQY 199
Query: 438 MRDPVRILVQKEE 476
+ RI V +E
Sbjct: 200 QQQAFRIEVAGDE 212
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 70.1 bits (164), Expect = 6e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA FS+ ILQ + R+ + LIL PTRELA QI + + A HLN K
Sbjct: 53 GKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIF 112
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDM 252
GG +R L+ GV +++ TPGR+ D+
Sbjct: 113 GGVGQNPQVRALQGGVDILIATPGRLMDL 141
Score = 49.6 bits (113), Expect = 8e-05
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L + +++FVLDEAD ML GF I + +L + SATMP ++ ++
Sbjct: 144 QKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRHNLFFSATMPHEIQTLANRI 203
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
+ +P ++ V T E ++Q M
Sbjct: 204 LVNPKKVEVTPVSSTAEKVEQRVM 227
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 70.1 bits (164), Expect = 6e-11
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F++ +L ++D +++ Q L+LAPTRELA Q+ + +L GG +
Sbjct: 93 GKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQS 152
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +RQL G HV+VGTPGRV D I
Sbjct: 153 MVVQLRQLARGAHVIVGTPGRVMDHI 178
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L+ +++ VLDEADEML GF D + + + A+ Q L SATMPD + V+ +
Sbjct: 180 RKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATMPDAIRRVAHRY 239
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+R+P + ++ T+ +Q Y
Sbjct: 240 LREPREVKIKASTTTVSTTRQRY 262
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 70.1 bits (164), Expect = 6e-11
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK--CHACIGGT 174
GKTA F + +L ID + QALIL+PTREL QQI+K + +++ + A GG
Sbjct: 52 GKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGE 111
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
+ + L+ H+V+ TPGR+ D+I
Sbjct: 112 KIDRQMNNLKRTTHIVIATPGRLIDLI 138
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILS-ADVQVILLSATMPDDVLEVSRC 434
R A+ + +K +LDEADEMLS GFK ++ + K + +D + L SATMPD++ + +
Sbjct: 140 RGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLFSATMPDEIKRIVKT 199
Query: 435 FM-RDPVRILVQKEELTLEGIK 497
+M + RI + K L I+
Sbjct: 200 YMDANAPRIEINKNTLVNANIR 221
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 70.1 bits (164), Expect = 6e-11
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + + H+ A GG
Sbjct: 55 GKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+R L G +VVGTPGR+ D
Sbjct: 115 YDVQLRALRQGPQIVVGTPGRLLD 138
Score = 57.6 bits (133), Expect = 3e-07
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + + VLDEADEML GF + + + + Q L SATMP+ + ++R F
Sbjct: 142 RGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRF 201
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M++P + +Q T I Q Y
Sbjct: 202 MKEPQEVRIQSSVTTRPDISQSY 224
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 69.7 bits (163), Expect = 7e-11
Identities = 36/85 (42%), Positives = 48/85 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + +L ID S + QAL+LAPTRELAQQ+ + GG++
Sbjct: 104 GKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSY 163
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + L G VVVGTPGR+ D+I
Sbjct: 164 QAQVGGLRRGARVVVGTPGRLLDLI 188
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
+L + +K VLDEADEMLS GF D I + D Q +L SAT+ V+ ++ ++
Sbjct: 192 SLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLSSRVMSIANRYLH 251
Query: 444 DPVRILVQKEELTLEGIKQFY 506
P I + +++ I+Q Y
Sbjct: 252 SPESISISPKQMIGSSIEQRY 272
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 69.7 bits (163), Expect = 7e-11
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + ++Q++ + AL+L PTRELA Q+ + +L + H GG ++
Sbjct: 96 GKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSI 155
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
E +R LE G ++VGT GRV D I
Sbjct: 156 AEQLRNLEQGGEIIVGTTGRVIDHI 180
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R +L + ++ F+LDEADEML+ GF + I +F + D +V++ SATMP +L ++ F
Sbjct: 182 RGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTF 241
Query: 438 M 440
M
Sbjct: 242 M 242
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 69.7 bits (163), Expect = 7e-11
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHA 159
GKT F ++I ++ DT + LI+APTRELA Q+ + + L + NA+
Sbjct: 49 GKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAEIAT 108
Query: 160 CIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
C+GG ++R++ R LE G H+VVGTPGR+ D I
Sbjct: 109 CVGGMDMRDERRALERGAHIVVGTPGRLVDHI 140
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/72 (26%), Positives = 41/72 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + + I+ VLDEADEML GF++++ + + + + ++ SAT+P + ++ +
Sbjct: 142 RGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKERRTLMFSATVPKGIAALATRY 201
Query: 438 MRDPVRILVQKE 473
++ +RI +
Sbjct: 202 QKNGLRITTDSD 213
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 69.7 bits (163), Expect = 7e-11
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G K A G
Sbjct: 53 GKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPF 112
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSR-TR 342
++L+ HVVVGTPGR+ D + F + +L + M M ++ +
Sbjct: 113 YHQEKELKQKTHVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIK 172
Query: 343 SMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELE 522
+ R L+ + S + L +Y+ + ++A + S ++ +E
Sbjct: 173 DLSKKRVTMLLSATMPSAIETLSN--RYMK---DPIHAEIEEESSAVDRISQERYTVEYR 227
Query: 523 EWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+ K++ L D+ + +IFCNT+++V
Sbjct: 228 D-KMKLLSDITIVENPDSCIIFCNTKQRV 255
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/73 (42%), Positives = 45/73 (61%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
IK V+DEADEM + GF DQI + K LS +LLSATMP + +S +M+DP+
Sbjct: 147 IKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSATMPSAIETLSNRYMKDPIHAE 206
Query: 462 VQKEELTLEGIKQ 500
+++E ++ I Q
Sbjct: 207 IEEESSAVDRISQ 219
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 69.7 bits (163), Expect = 7e-11
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH--LNAKCHACIGGT 174
GKT + + I Q+ID+S RE QALILAPT EL QI K + L + L IG
Sbjct: 52 GKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEV 111
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
N+ I +L+ H++VG+ GRV ++I
Sbjct: 112 NIVRQIEKLKEKPHIIVGSTGRVLELI 138
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ + ++TIK V+DEAD +L + + DV K D Q+++ SA M + S+
Sbjct: 140 RKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQLMIFSAYMNQRAMAESKEL 199
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
+D I+++ E L I Y+
Sbjct: 200 TKDAEVIIIEDEILVNPNITHLYL 223
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKT F + +Q + T R+ +ALIL PTRELA QI + ++ + + +GG
Sbjct: 51 GKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGL 110
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
N R +R + G ++VV TPGR+YD +
Sbjct: 111 NERSQLRDIRGGANIVVATPGRLYDFM 137
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
+R ++ T+++ +LDE+D ML GF I + + A+ Q +L SAT+ V ++
Sbjct: 138 SRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLFSATLESSVKQLVET 197
Query: 435 FMRDPVRI 458
+R+ VRI
Sbjct: 198 HVRNAVRI 205
>UniRef50_Q014T4 Cluster: Chromosome 07 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 07 contig 1, DNA
sequence - Ostreococcus tauri
Length = 506
Score = 69.3 bits (162), Expect = 1e-10
Identities = 34/91 (37%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = -2
Query: 503 KLFNTFQGKLFLLYKYAYRISHKASRYFQYIIRHGSRE*YDLNIS*QNLEDIMDLVLETS 324
+L NTF+G+ L + A+R+ H+ +R + + R E +LN+ + ED++DL+LETS
Sbjct: 198 ELLNTFKGEFVTLDQNAHRLGHELARDLERLRRKRRGENTNLNLRREQGEDVVDLILETS 257
Query: 323 GQHFISFIKNKKFDGVGMKRTTS--IISYTR 237
G+HFI F+K+K D V ++ T+ +++ TR
Sbjct: 258 GKHFIGFVKSKDLDVVALQSATTKHVVNSTR 288
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/80 (31%), Positives = 44/80 (55%)
Frame = -1
Query: 252 HIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSIQVITKSYHHLLNLLGQLSCGSQD 73
H++ +T ++T+L+ A IFT+ +A +A ++V+ + H LL+LLGQL QD
Sbjct: 282 HVVNSTRGTDDDVDTSLEDAGIFTNGRTADARVALHLKVVAEGAHDLLDLLGQLPRRRQD 341
Query: 72 QSLTFTNACIDLL*NRYRES 13
+ L + + L + ES
Sbjct: 342 ERLALGDGVVQGLEDTGAES 361
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 69.3 bits (162), Expect = 1e-10
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF+ ILQ + A++L RELA QI + G LN + +GG +
Sbjct: 51 GKTATFAFPILQDLAKDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDF 110
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + +LE H+VVGTPGR DMI
Sbjct: 111 NKQLSELERIPHIVVGTPGRTLDMI 135
Score = 36.3 bits (80), Expect = 0.83
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 270 HANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDD 413
+ +K VLDEAD + + I + + + + Q+IL +AT+ DD
Sbjct: 144 YIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIILATATINDD 191
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 69.3 bits (162), Expect = 1e-10
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I IL ++ A ILAPTRELAQQI++ +LG + + +GG N+
Sbjct: 130 GKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNM 189
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
+ R L H+++ TPGR+ D
Sbjct: 190 MDQARDLMRKPHIIIATPGRLMD 212
Score = 39.5 bits (88), Expect = 0.089
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKIL-SADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
+K V+DEAD +L F + + KI+ + + L SATM + ++ R + +PV+
Sbjct: 225 LKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKC 284
Query: 459 LVQKEELTLEGIKQFYM 509
V + T++ + Q M
Sbjct: 285 AVSNKYQTVDTLVQTLM 301
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + IL++ S + QAL+LAPTRELA Q+ + L + GGT++
Sbjct: 54 GKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNAGLSIVTVYGGTDL 112
Query: 181 REDIRQLESGVHVVVGTPGRVYDM 252
+ + L GV ++VGTPGRV DM
Sbjct: 113 EKQAKTLAKGVDIIVGTPGRVMDM 136
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + N+ K+ LDEAD ML GF I + + +++ Q +L SAT P ++++ + F
Sbjct: 139 RGHIDLNSPKMLCLDEADRMLDMGFFPDIMWIVERMTSRQQTLLFSATFPQEIIDAAHEF 198
Query: 438 MRDPVRILVQKEELTLEGI 494
M +P +L EEL + I
Sbjct: 199 MNEPDFVLTNAEELDIPPI 217
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L + N K GG
Sbjct: 75 GKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMP 134
Query: 178 VREDIRQLES-GVHVVVGTPGRVYDM 252
+ + LE+ HVVVGTPGR+ ++
Sbjct: 135 LGPQLASLEAHDPHVVVGTPGRIQEL 160
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+RALH ++ VLDEAD ML GF++ I ++ Q +L SAT PD + ++R
Sbjct: 163 KRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIRTLAREI 222
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
++DP+ I V+ + E +QF+
Sbjct: 223 LKDPIEITVEGADNAPEIDQQFF 245
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G ++ K GG +
Sbjct: 52 GKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGAS 111
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +L G VVV TPGR++D+I
Sbjct: 112 IVSQTEELRKGAQVVVATPGRLHDLI 137
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R A+ + + VLDEADEML GF+D+++ + + +L SATMP +V ++ +
Sbjct: 139 RGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSATMPREVAAIAANY 198
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M+DP+ I+V + E + Y
Sbjct: 199 MKDPLEIIVGRRNAGAENVDHIY 221
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 68.5 bits (160), Expect = 2e-10
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCHACIGGT 174
GKT + + I ++IDTS RE QALILAPT EL QI Q ++A L+ A IG
Sbjct: 51 GKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEV 110
Query: 175 NVREDIRQLES-GVHVVVGTPGRVYDMI 255
N+++ I+ +++ H+V+G+ GRV D+I
Sbjct: 111 NIQKQIKNIKAVKPHIVIGSCGRVLDLI 138
Score = 36.3 bits (80), Expect = 0.83
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L ++ IK VLDE D +L+ I D+ + D Q+I SA++ D +++
Sbjct: 140 QKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRTTLRDRQIIGCSASLTDSTIKICDKL 199
Query: 438 MRDPVRILVQKEE 476
M++ I+ KE+
Sbjct: 200 MKE-FEIIKTKEK 211
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F + IL++++ QALI+ PTRELA QI L + A GG +V
Sbjct: 52 GKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDV 111
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
+ +R+L+ +H+++GTPGR+ D
Sbjct: 112 EQQLRKLKGSIHIIIGTPGRLLD 134
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ ++ + + VLDEAD+ML GF + D+ + Q + SATMP+ V ++ +
Sbjct: 138 RKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFSATMPNQVRTLAEQY 197
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
M+DPV+I VQ + +TL+ I+Q
Sbjct: 198 MKDPVQIQVQSKRVTLDEIRQ 218
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 68.5 bits (160), Expect = 2e-10
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTN 177
GKTA F ++Q+ID + R QALIL+PTREL QI + + A GG +
Sbjct: 52 GKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGAS 111
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ E R ++ G ++V TPGR+ DMI
Sbjct: 112 ITEQARDIKRGAQIIVATPGRMQDMI 137
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR + + I +LDEADEML+ GF + I ++ + L SATMP +V + + F
Sbjct: 139 RRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSATMPAEVARIGKQF 198
Query: 438 MRDPVRILV 464
M DP+ I V
Sbjct: 199 MTDPIEITV 207
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 68.5 bits (160), Expect = 2e-10
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +++++D + QAL+L PTRELA Q+ + +L + GG ++
Sbjct: 52 GKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
IR L+ V +VVGTPGR+ D
Sbjct: 112 GNQIRALKRRVDLVVGTPGRIID 134
Score = 53.6 bits (123), Expect = 5e-06
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L IK V+DEADEML GF + + + + + Q+++ SATMP ++ ++R
Sbjct: 138 RGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSATMPQRIVTLARKH 197
Query: 438 M---RDPVRILVQKEELTLEGIKQFY 506
M + KE++T++ KQ Y
Sbjct: 198 MGNFETVTTVQENKEDITVKKAKQIY 223
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 68.5 bits (160), Expect = 2e-10
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I ILQ++ + +LILAPTREL+ QI++ +I+LG + +GG ++
Sbjct: 90 GKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDM 149
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
QL H++VG+PGR+ D
Sbjct: 150 VSQALQLSKKPHIIVGSPGRIAD 172
Score = 50.8 bits (116), Expect = 4e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 279 TIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
TIK VLDEAD++LS F D ++ + L D L SATM + ++ + + P++I
Sbjct: 184 TIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSATMTSKITKLQKVTLMKPIQI 243
Query: 459 LVQKEELTLEGIKQFYM 509
V + T E + Q Y+
Sbjct: 244 NVNTKYHTSEHLIQKYL 260
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 68.5 bits (160), Expect = 2e-10
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L +L GG
Sbjct: 53 GKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQP 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ I+ L+ GV +++GTPGRV D I
Sbjct: 113 IDRQIKALQKGVQIIIGTPGRVMDHI 138
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L N IK +LDEADEML GF++ I + + + + Q +L SAT+P ++L++++ +
Sbjct: 140 RGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLLFSATLPQEILQLAQRY 199
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+P + V K ELT ++Q Y
Sbjct: 200 QTNPEIVKVTKHELTTPDVEQKY 222
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN 177
GKT F + IL++ID + QALI+APTRELA QI ++ L + A GG +
Sbjct: 54 GKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQD 113
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
V + +R+L+ H+VV TPGR+ D I
Sbjct: 114 VAQQLRKLKGNTHIVVATPGRLLDHI 139
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + + + VLDEAD+ML GF I D+ Q +L SAT+P D+ ++++ +
Sbjct: 141 RETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRY 200
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
M +P I VQ EE+T++ I+Q
Sbjct: 201 MDEPQMIQVQSEEVTVDTIEQ 221
>UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;
n=1; uncultured marine bacterium 66A03|Rep: Putative
cold-shock dead-box protein A - uncultured marine
bacterium 66A03
Length = 659
Score = 68.1 bits (159), Expect = 2e-10
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F ISI + E A+I+APTRELA Q++K + L A+ +C
Sbjct: 49 GKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRTKAQFASC 108
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG + R + R LESG H+VVGTPGR+ D I
Sbjct: 109 VGGMDPRAERRTLESGAHIVVGTPGRLRDHI 139
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + IK VLDEADEML GF++ + + + + +L SAT+P ++++++ +
Sbjct: 141 RGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFSATVPTQIVKLAKTY 200
Query: 438 MRDPVRILVQKEE 476
+D VRI V ++
Sbjct: 201 QKDSVRISVSSKK 213
>UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG425
homolog; n=4; Mycoplasma|Rep: Probable ATP-dependent RNA
helicase MG425 homolog - Mycoplasma pneumoniae
Length = 450
Score = 68.1 bits (159), Expect = 2e-10
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F I +++ + S Q L++APTRELA+QI+ I H + K + IGG
Sbjct: 52 GKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGI 111
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
+ + ++QLE+ +VVGT GRV D++
Sbjct: 112 PIWQQLKQLENQPEIVVGTMGRVMDLL 138
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR 431
++DE D ML RGFK ++ D+ + Q+ + SA+ ++ +E ++
Sbjct: 152 IIDEVDLMLDRGFKRKLFDLLSRIEKFEQIAVYSASYNEETIETAK 197
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N K + IGG
Sbjct: 73 GKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIESFIGGRP 132
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +D+++ S H+ VG PGRV ++
Sbjct: 133 LEDDLKK-SSKCHIAVGAPGRVKHLL 157
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
AL N +KLFVLDEAD+++ F+ I++++ L Q+I+ SAT P ++ +M+
Sbjct: 161 ALTTNLVKLFVLDEADKLMEESFQSDINEIYNSLPPRKQMIVSSATYPQELDTFLANYMQ 220
Query: 444 DPVRILVQKEELTLEGIKQF 503
P + + E L G+KQF
Sbjct: 221 SPTHVTSENETPLLLGLKQF 240
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT FS L + Q LILAPTRE+A QI V+ A+G + +CH IGGT
Sbjct: 112 GKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTP 171
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +D +L+ H+ VG+PGR+ +I
Sbjct: 172 LSQDKTRLKK-CHIAVGSPGRIKQLI 196
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRG-FKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++ +SAT P+ + +MR
Sbjct: 201 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMR 260
Query: 444 DPVRILVQKEELTLEGIKQFY 506
DP + + + +L G+KQ+Y
Sbjct: 261 DPTFVRLNPSDPSLIGLKQYY 281
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + +K VLDEADEML GF + + +V + L A QV L SATMP + +++ +
Sbjct: 151 RGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMPPQIRRIAQTY 210
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
++DP+ + + + T I+Q Y
Sbjct: 211 LQDPIEVTIATKTTTAANIRQRY 233
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F++ +L + + + Q L+LAPTRELA Q+ + ++ + GG +
Sbjct: 64 GKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQS 123
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ + L+ GVHV+VGTPGRV D
Sbjct: 124 YGQQLAALKRGVHVIVGTPGRVID 147
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTAT +I I +++T + + QALI+ PTRELA Q +G + K A GG +
Sbjct: 64 GKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDS 123
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+L+ GV V+V TPGR+ D I
Sbjct: 124 ALQQSKLKHGVQVLVATPGRLIDFI 148
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R + + ++ +LDEADEMLS GF D + + + L+ Q +L SATMP + +++ M
Sbjct: 151 RQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAKHHM 210
Query: 441 RDPVRI 458
+DP +
Sbjct: 211 KDPQEV 216
>UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1;
Idiomarina loihiensis|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 474
Score = 67.7 bits (158), Expect = 3e-10
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGTN 177
GKT F++++L +++ QAL+L PTRELA Q+ V L LN K GG
Sbjct: 70 GKTTAFALTLLAKLEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEP 129
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
R LE G HV+VGTPGRV D
Sbjct: 130 SRIQTNSLEHGAHVLVGTPGRVLD 153
Score = 41.5 bits (93), Expect = 0.022
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDV 416
+R + + + VLDEAD ML GF+D ++ + K + Q +L SAT P ++
Sbjct: 157 QRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLLFSATYPKNI 209
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V LN + A G
Sbjct: 50 GKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYG 109
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G + I QL+ GV V++ TPGR+ D+
Sbjct: 110 GVRIEPQIAQLQEGVDVLIATPGRLLDL 137
Score = 49.6 bits (113), Expect = 8e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+RALH +++ V DEAD ML GF D + + +L Q +L SAT + +R
Sbjct: 140 QRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLFSATFSKQIKHFAREM 199
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+ P I V T++ + Q +
Sbjct: 200 LNAPKTIEVSAVNSTVDLVAQTF 222
>UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Superfamily II DNA and RNA helicase -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 431
Score = 67.7 bits (158), Expect = 3e-10
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F + +L +IDT+++ Q LILAP++ELA Q +V G+ + A + IGG N
Sbjct: 42 GKTLAFVLPVLSRIDTNLKRTQVLILAPSQELAMQTTQVAREWGNAVGASVASLIGGANG 101
Query: 181 REDIRQLESG-VHVVVGTPGRVYDMI 255
R +++ H+VVGT GRV M+
Sbjct: 102 RRQADKIKKDKPHIVVGTLGRVLTMV 127
Score = 33.9 bits (74), Expect = 4.4
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
L + I + DEAD ML+ D +H++ L + +Q+ L SAT D+ VS F
Sbjct: 132 LKLDHIATVIFDEADAMLTEERHDSLHELADKLPSHIQLGLFSATSGVDLNYVSDTF 188
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + ++ VLDEAD ML GF D + ++ K + + L SATMP ++++++R F
Sbjct: 155 RDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSATMPKEIVDIARKF 214
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M++ + + K+ELT E +Q Y
Sbjct: 215 MKEYIHVSTVKDELTTENAEQLY 237
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA F I +L++ID + +A+I+ PTRELA QI + + +L K GG +
Sbjct: 68 GKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQS 127
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ + + LE GV +VVGTPGR+ D
Sbjct: 128 LEKQFKDLEKGVDIVVGTPGRIID 151
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ + + N GG +
Sbjct: 54 GKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGAD 113
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+R +R L+ V+VGTPGRV D
Sbjct: 114 MRNQLRALKQNPQVIVGTPGRVMD 137
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + +K VLDEADEML GF + I + + D Q L SATMP + ++ +
Sbjct: 141 RGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSATMPHQIKRITDQY 200
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+DPV+I ++ L+ I+Q
Sbjct: 201 QKDPVKIEIKASHSELQQIEQ 221
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F I I+++++ + R QALIL PTRELA Q++ + L A GG
Sbjct: 53 GKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGK 112
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
+R + +L+ H+VVGTPGRV D++
Sbjct: 113 PLRSQMEKLKRAPHIVVGTPGRVIDLM 139
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
TRRAL ++ VLDEAD ML GF+ I + + + Q +LLSAT+P + ++++
Sbjct: 140 TRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVPPTIEKLAQR 199
Query: 435 FMRDPVRILVQKEELTLEGIKQFY 506
+MR+P ++ ++ E I+Q Y
Sbjct: 200 YMRNPEKVDFSPTNISAETIEQRY 223
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/85 (42%), Positives = 47/85 (55%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F +SILQ + Q LIL P RELA Q+ + + +L K A G N+
Sbjct: 52 GKTAVFGVSILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + L GV +V GTPGRV+D I
Sbjct: 112 NLETQILNKGVSIVTGTPGRVFDHI 136
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L I+ VLDEAD ML GF DQ+ + K L + +L SATMP ++ + + +M +
Sbjct: 141 LSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFSATMPPEIHNICKRYMNN 200
Query: 447 PVRILVQKEELTLEGIKQFY 506
PV I ++ + T++ I Q Y
Sbjct: 201 PVTIEIESQTKTVDTIHQVY 220
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L+ + + FVLDEADEML GF + I + +L + Q L SAT+P +++E+++ F
Sbjct: 136 RGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFLFSATIPSEIIELAKGF 195
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M + + + K+E+T+ GI Y
Sbjct: 196 MHNEEILFLSKDEVTVNGIDHNY 218
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/85 (40%), Positives = 48/85 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA + I I+ + +ALIL PTRELA Q+ KV ALG + GG ++
Sbjct: 51 GKTAAYLIPIINNTAKE-KGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSI 109
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ I + G +++VGTPGR D+I
Sbjct: 110 NKQIELILRGANIIVGTPGRTLDLI 134
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 67.7 bits (158), Expect = 3e-10
Identities = 33/83 (39%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILS--ADVQVILLSATMPDDVLEVSRCFM 440
L + IKLFV+DEADEML GF++Q+ +F+ ++ +VQ+ + SAT ++ L VS +
Sbjct: 176 LSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRITNKDEVQIAMFSATYDEEELRVSEEIL 235
Query: 441 RDPVRILVQKEELTLEGIKQFYM 509
+PV I ++ + TL+GI+Q+++
Sbjct: 236 INPVIIDLRYNDQTLKGIRQYFI 258
Score = 61.3 bits (142), Expect = 3e-08
Identities = 36/85 (42%), Positives = 46/85 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F+++ LQ D S Q L+LA TRE+A Q LG + A+ GG+ +
Sbjct: 87 GKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPI 146
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
D LE H+VVGTPGRV MI
Sbjct: 147 AADKVALEKKPHIVVGTPGRVEHMI 171
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 67.7 bits (158), Expect = 3e-10
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT FS L + Q LILAPTRE+A QI V+ A+G + +CH IGGT
Sbjct: 111 GKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTP 170
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +D +L+ H+ VG+PGR+ +I
Sbjct: 171 LSQDKTRLKK-CHIAVGSPGRIKQLI 195
Score = 64.1 bits (149), Expect = 4e-09
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRG-FKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L+ +I+LF+LDEAD++L G F++QI+ ++ L A Q++ +SAT P+ + +MR
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMR 259
Query: 444 DPVRILVQKEELTLEGIKQFY 506
DP + + + +L G+KQ+Y
Sbjct: 260 DPTFVRLNSSDPSLIGLKQYY 280
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 67.3 bits (157), Expect = 4e-10
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+RAL +++FVLDEAD+ML GF + + K+L + Q + SATMP + E+S F
Sbjct: 146 QRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSATMPKTIQELSSQF 205
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
+ DPV + V + T E ++QF
Sbjct: 206 LSDPVTVSVAPQSSTAERVEQF 227
Score = 64.1 bits (149), Expect = 4e-09
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ + + T+ R C+ LIL+PTRELA QI + HL +A
Sbjct: 55 GKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVF 114
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + +R L+ G ++V TPGR+ D+I
Sbjct: 115 GGVPIGRQMRMLDRGTDILVATPGRLLDLI 144
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 67.3 bits (157), Expect = 4e-10
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + IL + + ALILAPTRELA QI+ +LN + A GGT V
Sbjct: 21 GKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARYLNVRTFAFYGGTKV 77
Query: 181 REDIRQLESG-VHVVVGTPGRVYDMI 255
D++ L G V VV+GTPGR+ D+I
Sbjct: 78 FGDLKVLRGGKVDVVIGTPGRIKDLI 103
Score = 56.8 bits (131), Expect = 6e-07
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R AL + ++ FVLDE D ML FK+ I ++ L + QV +SAT P +V E+S +
Sbjct: 105 RGALKTDDVRYFVLDEVDVMLDMNFKEDIDFIYSQLPEEKQVFFVSATFPKEVRELSHRY 164
Query: 438 MRDPVRILVQKEEL 479
+ P I V+ EL
Sbjct: 165 TKKPEFIKVESREL 178
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A G HL + GG
Sbjct: 50 GKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGG 109
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDM 252
+ + +L+ GV ++V TPGR+ D+
Sbjct: 110 VGQQPQVDKLKKGVDILVATPGRLLDL 136
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/73 (38%), Positives = 44/73 (60%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+++FVLDEAD ML GF + V K+L A Q + SATMP +V+++ +++PV++
Sbjct: 147 LEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQTLFFSATMPPEVMDLVNGLLKNPVKVA 206
Query: 462 VQKEELTLEGIKQ 500
V +E I Q
Sbjct: 207 VDPVSSPVEIIDQ 219
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F++ +L +ID ++ E Q L+LAPTRELA Q+ + N GG +
Sbjct: 73 GKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQD 132
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
IR L+ G V+VGTPGR+ D
Sbjct: 133 FSPQIRGLKRGAQVIVGTPGRMLD 156
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + +K VLDEADEML GF D + + Q L SATMP + +V++ ++++
Sbjct: 163 LKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFSATMPPQIKKVAQTYLKN 222
Query: 447 PVRILVQKEELTLEGIKQFYM 509
+ ++ E T+E I QF +
Sbjct: 223 ATEVRIESETRTVERIAQFVL 243
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 67.3 bits (157), Expect = 4e-10
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Frame = +1
Query: 1 GKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNA-KCHAC 162
GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V A L + K
Sbjct: 167 GKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIV 226
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYD 249
+GGTN+ + +L +GV + V TPGR D
Sbjct: 227 VGGTNIEKQRSELRAGVEIAVATPGRFID 255
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
I VLDEAD ML GF+ QI ++ + L Q +L SATMP ++ +++ ++ +PV++
Sbjct: 267 ISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALAKEYLANPVQVK 326
Query: 462 VQKEELTLEGIKQ 500
V K + Q
Sbjct: 327 VGKVSSPTTNVSQ 339
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 67.3 bits (157), Expect = 4e-10
Identities = 36/83 (43%), Positives = 47/83 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + ILQ++ + ALILAPTREL QI + ++A+G L +GG +
Sbjct: 100 GKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDH 159
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
L HVVVG+PGRV D
Sbjct: 160 NTQAIALAKKPHVVVGSPGRVVD 182
Score = 39.9 bits (89), Expect = 0.068
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +3
Query: 279 TIKLFVLDEADEMLSRGFKDQIHDVFKILS--ADVQVILLSATMPDDVLEVSRCFMRDPV 452
++K+ VLDEAD +LS F + + + + A+ Q +L SATM V ++ + ++ PV
Sbjct: 194 SVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPV 253
Query: 453 RILVQKEELTLEGIKQFYM 509
++ V + ++Q ++
Sbjct: 254 KLEVNSKYDVASHLQQHFL 272
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 66.9 bits (156), Expect = 5e-10
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA F+I ILQ + R+ +AL+LAPTRELA QI + A G +L +
Sbjct: 50 GKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVI 109
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG R+LE G+ ++V TPGR+ D+I
Sbjct: 110 FGGVGQAPQTRKLEKGIDILVATPGRLLDLI 140
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
++ FVLDE D+ML G + + L + Q +L SATMP ++ +++ ++ PV+I
Sbjct: 150 VEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATMPVEIEKLADTILKGPVKIA 209
Query: 462 VQKEELTLEGIKQ 500
+ E L+ I+Q
Sbjct: 210 MTPEFSPLDIIEQ 222
>UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3;
Rhodospirillales|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 731
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
ALI+APTRELA Q+Q+ ++ L A+ +CIGG + R + + LE G H+VVGTPGR+
Sbjct: 120 ALIVAPTRELAMQVQQELLWLYGPAGARVVSCIGGMDARREAQALERGCHIVVGTPGRLC 179
Query: 247 D 249
D
Sbjct: 180 D 180
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/67 (31%), Positives = 42/67 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L+ + ++ VLDEADEML GF+D++ ++ A+ + +L SAT+ ++ +++ +
Sbjct: 184 RGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTLLFSATIAREIAALAKRY 243
Query: 438 MRDPVRI 458
+ +RI
Sbjct: 244 QTNALRI 250
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F I I++ + + ALI+ PTRELA QI + +L + IGGTN+
Sbjct: 104 GKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNI 163
Query: 181 REDIRQLESGVHVVVGTPGRVYDM 252
D++ L +HV+VGTPGR+ D+
Sbjct: 164 NTDMKVLSRKLHVIVGTPGRLLDL 187
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L N +K VLDE D ML GF + + + ++ Q +L SAT+ + + +
Sbjct: 190 RKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTMLFSATLEPNQKNLIQSL 249
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+++PV + + T E I+Q
Sbjct: 250 LKNPVEVKINTGVSTNENIEQ 270
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/86 (39%), Positives = 47/86 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F + +L+++D + QAL+L PTRELA Q++ L + + A GG
Sbjct: 86 GKTGAFLLPLLERLDPAEASTQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVGY 145
Query: 181 REDIRQLESGVHVVVGTPGRVYDMIL 258
+ L G H VVGTPGRV D +L
Sbjct: 146 GKQNDALREGAHFVVGTPGRVLDHLL 171
Score = 42.3 bits (95), Expect = 0.013
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL-SADVQVILLSATMPDDVLEVSRC 434
RR + + ++ DEAD MLS GF + ++ + L + L SAT P VL ++
Sbjct: 172 RRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIATCLFSATYPPHVLNLAGE 231
Query: 435 FMRDP 449
F+R+P
Sbjct: 232 FLREP 236
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 66.9 bits (156), Expect = 5e-10
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L L N K GG
Sbjct: 52 GKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQP 111
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
L+ H++V TPGR+ D
Sbjct: 112 FGMQRDSLQHAPHIIVATPGRLLD 135
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/77 (36%), Positives = 40/77 (51%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
+ + V+DEAD ML GF D I DV + A Q +L SAT P+ + +S RDP+
Sbjct: 145 DALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLA 204
Query: 456 ILVQKEELTLEGIKQFY 506
I + + +QFY
Sbjct: 205 IEIDSTDALPPIEQQFY 221
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 66.5 bits (155), Expect = 7e-10
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A + N A
Sbjct: 50 GKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIF 109
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + R LE+GV ++V TPGR+ + I
Sbjct: 110 GGRKMSSQERMLENGVDILVATPGRLEEHI 139
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
I+ V DEAD +L GF + + + + + Q+++ SAT + E+S+ +R P RI
Sbjct: 149 IEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSKDILRKPKRIA 208
Query: 462 VQKEELT 482
V++E T
Sbjct: 209 VERENTT 215
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 66.5 bits (155), Expect = 7e-10
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA +++ I+Q++ ++ R + L++APTRELA QI +LG + + GG N
Sbjct: 50 GKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVN 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ + IR+L SGV VVV PGR+ D I
Sbjct: 110 MDQQIRRLRSGVDVVVACPGRLLDHI 135
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
++ ++DEAD M GF+ I + K L Q +L SATMP +V +++ +PV +
Sbjct: 145 VETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTLETQTNPVTVQ 204
Query: 462 V 464
V
Sbjct: 205 V 205
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 66.5 bits (155), Expect = 7e-10
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD +N + H
Sbjct: 325 GKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGDSVNIQAH 376
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 66.5 bits (155), Expect = 7e-10
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT F+ L + Q L+LAPTRE+A QI VV+A+G + +CH IGG
Sbjct: 75 GKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRP 134
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ +D + L+ H+ +G+PGR+ +I
Sbjct: 135 ISQDKQHLKK-CHIAIGSPGRIKQLI 159
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEML----SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR 431
AL ++I+LFVLDEAD++L S F++QI+ ++ L A+ Q++ LSAT P+ + +
Sbjct: 163 ALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLS 222
Query: 432 CFMRDPVRILVQKEELTLEGIKQFY 506
+MR+P + + + L G+KQ+Y
Sbjct: 223 RYMREPTFVRLNPTDPGLLGLKQYY 247
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 66.1 bits (154), Expect = 9e-10
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL------GDHLNAKCHAC 162
GKT + + L +I+ E Q +I APTRELAQQI + ++ L + A+C
Sbjct: 53 GKTHAYLLPTLNRINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARC--L 110
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
IGGT+ + I +L+ H+VVGTPGR+ D++
Sbjct: 111 IGGTDKQRSIEKLKKQPHIVVGTPGRIKDLV 141
Score = 43.2 bits (97), Expect = 0.007
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKI---LSADVQVILLSATMPDDVLEVSR 431
+AL + ++DEAD ML GF IHDV KI + ++Q+++ SAT+P + +
Sbjct: 144 QALFVHKANTIIVDEADLMLDMGF---IHDVDKIAARMPKNLQMLVFSATIPQKLKPFLK 200
Query: 432 CFMRDPVRILVQKEELTLEGIKQF 503
+M +P I + +++ I+ +
Sbjct: 201 KYMENPEHIHINPKQVAAGNIEHY 224
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 66.1 bits (154), Expect = 9e-10
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + + +K VLDEADEML GF I + + Q L SAT+PD+V E+ F
Sbjct: 138 RGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSATLPDEVRELGTKF 197
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M+ P IL++ E T+ I+Q+Y
Sbjct: 198 MKQPEIILIESPERTVPEIEQYY 220
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA+F I IL ++ QAL+L PTRELA Q+ + + +L + + A GG ++
Sbjct: 53 GKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
+R L ++VGTPGR+ D
Sbjct: 112 ELQLRSLRRNPEIIVGTPGRLMD 134
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 66.1 bits (154), Expect = 9e-10
Identities = 35/83 (42%), Positives = 48/83 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG + + +GG ++
Sbjct: 153 GKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDM 212
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
L HV+V TPGR+ D
Sbjct: 213 MSQSIALSKRPHVIVATPGRLQD 235
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
++ V+DEAD +L F I + + + + + +L SATM V ++ R +++PVR+
Sbjct: 248 LQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLFSATMTTKVAKLQRASLKNPVRVE 307
Query: 462 VQKEELTLEGIKQFYM 509
V + T+ +KQ YM
Sbjct: 308 VDTKYTTVSTLKQHYM 323
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F+I I++++ + +AL+L PTRELA Q+++ + L + + GGT+V
Sbjct: 49 GKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSV 108
Query: 181 REDIRQLES-GVHVVVGTPGRVYDMI 255
++++ L++ V +++GTPGR+ D+I
Sbjct: 109 KQNLDILQNKNVDILIGTPGRIKDLI 134
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+AL+ + ++ VLDE D+ML GF + I + L + + SAT+P + +++ F
Sbjct: 136 RKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSATVPSRIELLAKRF 195
Query: 438 MRDPVR-ILVQKEEL 479
++ + + VQ EL
Sbjct: 196 LKSDFKFVKVQSVEL 210
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA+F I + + ++ + QAL+L PTRELA Q+++ + +G K A G +
Sbjct: 53 GKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPF 112
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+L+ H+VVGTPGRV D I
Sbjct: 113 ARQKLELKQKTHIVVGTPGRVLDHI 137
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +K V+DEADEML+ GF DQ+ + L +L SAT+P+DV +SR +M
Sbjct: 142 LSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNA 201
Query: 447 PVRILVQKEELTLEGIK 497
P I ++ +T + I+
Sbjct: 202 PTHIEIKAAGITTDKIE 218
>UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase
DbpA; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to ATP-independent RNA helicase DbpA -
Candidatus Kuenenia stuttgartiensis
Length = 407
Score = 65.7 bits (153), Expect = 1e-09
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA +I ++Q++D S+ Q L++ PTREL Q + + + + +A GG +
Sbjct: 50 GKTAACAIPLIQKVDPSLDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFDR 109
Query: 181 REDIRQLESGVHVVVGTPGRVYDMIL--VVRFMPTPSNFL-FLMKLMKC--CPEVSRTRS 345
I +++ VH++V TPGR+ D++ ++ F L +L+K ++ S
Sbjct: 110 AAQIARVKQTVHILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILS 169
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+ + L+F + +P + D L E Y L ++S P + + F+ + ++
Sbjct: 170 CIRHKHQTLLFS---ATMPDDIKKLTQ-DCLHEPQYISLVTKRSAPESIEHYFSYVNPKQ 225
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
K E L + QA+IFCN R V
Sbjct: 226 -KHEELVKYLKGEEVNQALIFCNARHMV 252
Score = 52.8 bits (121), Expect = 9e-06
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
IK +LDEADE+L GF + I + + Q +L SATMPDD+ ++++ + +P I
Sbjct: 144 IKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLFSATMPDDIKKLTQDCLHEPQYIS 203
Query: 462 VQKEELTLEGIKQFYMH 512
+ + E I+ ++ +
Sbjct: 204 LVTKRSAPESIEHYFSY 220
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKTA F + +L +I+ +I Q LILAPTRELA Q+ + V + GG +
Sbjct: 61 GKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS 120
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+R L+ GVH +VGTPGRV D I
Sbjct: 121 YDIQLRPLKRGVHAIVGTPGRVMDHI 146
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L + +K FVLDEADEML GF D I + + + Q+ L SATMP+ + ++++ F
Sbjct: 148 KKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSATMPNVIKKIAKQF 207
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
+ P I ++ + T I Q Y
Sbjct: 208 LNQPKIIKIKTKTETATTITQKY 230
>UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5;
Bacteroidetes|Rep: ATP-independent RNA helicase -
Flavobacteria bacterium BAL38
Length = 463
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/85 (36%), Positives = 50/85 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F + I Q ++ ++ Q LIL P+REL QI++V +G H K + C GG ++
Sbjct: 45 GKTLAFLLPIFQMMEEEVKGVQCLILVPSRELGLQIEQVWKKMGTHF--KVNTCYGGHSI 102
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + L + +++GTPGR+ D I
Sbjct: 103 ETEFKNLSNPPALLIGTPGRIADHI 127
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 65.7 bits (153), Expect = 1e-09
Identities = 37/85 (43%), Positives = 48/85 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ IL ++ AL LAPTRELA Q+ + ALG L +C A IGG +
Sbjct: 126 GKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDS 185
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ L HVVV TPGR+ +I
Sbjct: 186 LGQAKGLARRPHVVVATPGRIATLI 210
Score = 39.5 bits (88), Expect = 0.089
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 464
K VLDEAD +L F++ + +F L Q L SAT+ D++ + +
Sbjct: 224 KFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLELSGNNSYFFEA 283
Query: 465 QKEELTLEGIKQFYMH 512
+ T++ +KQ Y+H
Sbjct: 284 YEGFKTVDTLKQLYIH 299
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 65.7 bits (153), Expect = 1e-09
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QI+K ++ ++ K C GG+N+ I +L+ GV+V+V TPGR+ D
Sbjct: 465 LVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLID 524
Query: 250 MI 255
++
Sbjct: 525 LL 526
Score = 50.4 bits (115), Expect = 5e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
VLDEAD M GF+ QI +F + D Q +L SAT P + ++++ + +P+ I+V
Sbjct: 543 VLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGV 602
Query: 474 ELTLEGIKQ 500
+ I Q
Sbjct: 603 SVVASEISQ 611
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R +L + I + VLDE D ML G K+Q+ ++ K L QV++ SATMP ++ VS+ +
Sbjct: 136 RGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKY 195
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
+ +PVRI V IKQ MH
Sbjct: 196 LNNPVRITVGATNKAAAEIKQESMH 220
Score = 50.4 bits (115), Expect = 5e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKT + +L ID+ I+ + ALIL PTRELA QI + + IGG
Sbjct: 52 GKTLAY---LLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEP 108
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ + QL+ V++GTPGR+ D
Sbjct: 109 MPKQFIQLKKNPKVIIGTPGRIID 132
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 65.3 bits (152), Expect = 2e-09
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 8/213 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTS---IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA+F++ +LQ++ S R ++LIL PTRELA Q+ + G +L IGG
Sbjct: 340 GKTASFTLPMLQKLAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGG 399
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSR 336
++ E L GV V++ TPGR+ D+ + T ++ L + M M P++ +
Sbjct: 400 ESMAEQRDVLNRGVDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEK 459
Query: 337 TRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIE 516
+++ + L F + ++ P + + DA R+S + I
Sbjct: 460 IVALLPAHRQTLFFSA--TMAPEIR---RLADAFLRHPVEITVSRQSSVATTIEEALVIV 514
Query: 517 LEEWKLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
E+ K TL L ++ A++FCN +R V +
Sbjct: 515 PEDEKRRTLKKLLRRENVQSAIVFCNRKRDVDM 547
Score = 49.6 bits (113), Expect = 8e-05
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
V+DEAD ML GF I + +L A Q + SATM ++ ++ F+R PV I V ++
Sbjct: 441 VIDEADRMLDMGFIPDIEKIVALLPAHRQTLFFSATMAPEIRRLADAFLRHPVEITVSRQ 500
Query: 474 ELTLEGIKQ 500
I++
Sbjct: 501 SSVATTIEE 509
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ +LQ++ S + L+L PTRELA+Q+ + IA G L+ + A
Sbjct: 50 GKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAY 109
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDM 252
GG ++ + +L GV V+V TPGR+ D+
Sbjct: 110 GGVSINPQMMKLRKGVDVLVATPGRLLDL 138
Score = 60.1 bits (139), Expect = 6e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ A+ + ++ VLDEAD ML GF +++ VF L A Q +L SAT DD+ ++
Sbjct: 141 QNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFSDDIRAMAATI 200
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
+R PV I V T IKQ+
Sbjct: 201 LRGPVNISVSPPNATASKIKQW 222
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 65.3 bits (152), Expect = 2e-09
Identities = 30/80 (37%), Positives = 55/80 (68%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+A++ + +++ VLDEAD+ML+ GFK+++ ++FK+L Q +L SAT+ DV ++ +
Sbjct: 150 KAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKRQNLLFSATLGKDVDTITEFLL 209
Query: 441 RDPVRILVQKEELTLEGIKQ 500
DPV+I + EE ++ I+Q
Sbjct: 210 HDPVKIEIIAEEQNIDLIQQ 229
Score = 60.5 bits (140), Expect = 4e-08
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI----RECQALILAPTRELAQQIQKVVIALGDHL--NAKCHAC 162
GKTA+F + ILQ + T R AL+L PTRELA Q+ +V A + L K A
Sbjct: 58 GKTASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAV 117
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG ++ + QL+ GV +++ TPGR+ D++
Sbjct: 118 YGGVSINPQMIQLQ-GVEILIATPGRLLDLV 147
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA+F++ IL +ID QAL+LAPTRELA Q+ + ++ GG +
Sbjct: 56 GKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQS 115
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ L GVHVVVGTPGRV D
Sbjct: 116 YGAQLSALRRGVHVVVGTPGRVID 139
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/81 (38%), Positives = 44/81 (54%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
+L + IK VLDEADEML GF D + + + Q L SATMP + ++ ++R
Sbjct: 145 SLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFSATMPSAIKRIATTYLR 204
Query: 444 DPVRILVQKEELTLEGIKQFY 506
DP I V + T + I+Q Y
Sbjct: 205 DPDLITVAAKTGTADNIRQRY 225
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG + + GG
Sbjct: 50 GKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVG 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ I++L GV + V PGR+ D
Sbjct: 110 YQGQIQRLRRGVEIAVVCPGRLLD 133
Score = 49.6 bits (113), Expect = 8e-05
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + + +LDEAD+M GF + + ++ A Q +L SATMPD + ++R
Sbjct: 137 RGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFSATMPDAIRALAREA 196
Query: 438 MRDPVRILV 464
+R+P I +
Sbjct: 197 LREPQTIQI 205
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 65.3 bits (152), Expect = 2e-09
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQID---TSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ IL Q+D + C Q L+L+PTRELA QI + G ++ +
Sbjct: 45 GKTAAFALPILNQLDLDRSRADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIF 104
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG +R L+ GVHV + TPGR+ D++
Sbjct: 105 GGVGQNPQVRALKRGVHVAIATPGRLLDLM 134
Score = 56.8 bits (131), Expect = 6e-07
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 464
K FVLDEAD ML GF + + L Q I +ATMP V +++ + +PVRI V
Sbjct: 145 KTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFTATMPPKVAQLASGLLNNPVRIEV 204
Query: 465 QKEELTLEGIKQFYMH 512
E T E ++Q M+
Sbjct: 205 APESTTAERVEQRLMY 220
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 65.3 bits (152), Expect = 2e-09
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F SI L++ D I + C+ L+LAPTREL QI G K + +
Sbjct: 51 GKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIV 110
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT+V +D +L G +++ TPGR+ D+I
Sbjct: 111 GGTSVNKDRNKLHRGTDILIATPGRLLDLI 140
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/82 (31%), Positives = 48/82 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++A + ++++ VLDEAD+ML GF + + +++ + Q + SATMP + E+ +
Sbjct: 142 QKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFSATMPKAIKELVSGY 201
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
+PV++ V E T E I Q+
Sbjct: 202 CNNPVQVSVTPESTTAERIDQY 223
>UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ATP-dependent RNA
helicase - Entamoeba histolytica HM-1:IMSS
Length = 450
Score = 64.9 bits (151), Expect = 2e-09
Identities = 35/100 (35%), Positives = 52/100 (52%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ I+ + T AL+L PTRELA QI A G +N + +GG +V
Sbjct: 79 GKTAAFALPIIHHLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDV 138
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL 300
+ L HV++ TPG++ +I + F + FL L
Sbjct: 139 IRILHHLSGSPHVIIATPGKLVSLIDHLPFSFDSAKFLIL 178
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 64.9 bits (151), Expect = 2e-09
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A G + K GG
Sbjct: 50 GKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGV 109
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
+ L SG+ ++V TPGR+ D+I
Sbjct: 110 GQKPQTDALRSGIQILVATPGRLLDLI 136
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
+++ FVLDEAD ML GF I + K+L A Q + SATMP ++ ++ + P +
Sbjct: 144 SSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLFFSATMPPEIETLANSMLTKPEK 203
Query: 456 ILVQKEELTLEGIKQ 500
+ V T++ I Q
Sbjct: 204 VEVTPASSTVDIISQ 218
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTN 177
GKTA F + L +ID S+++ Q L++ PTRELA Q+ + + + A + GG
Sbjct: 57 GKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAP 116
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
++ L+ G +VVGTPGR+ D++
Sbjct: 117 FGPQVKALKQGTAIVVGTPGRLIDLL 142
Score = 58.8 bits (136), Expect = 1e-07
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ L + +K+ VLDEADEML+ GF + I + K + Q L SATMP+ + ++++ F
Sbjct: 144 KNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALFSATMPNAIRKLAKTF 203
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
++DP+ I ++ IKQ
Sbjct: 204 LKDPLNIQIEAIAREKATIKQ 224
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ AL +K VLDEAD ML GF D++ D+ +VQ +L SAT PD V E++
Sbjct: 142 KNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFSATFPDKVKELTEEL 201
Query: 438 MRDPVRILVQKEELTL 485
+R+PV I V K+E TL
Sbjct: 202 LRNPVEISV-KQEATL 216
Score = 50.8 bits (116), Expect = 4e-05
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH--AC 162
GKTA F + +L+++ + AL+L PTRELA Q+ + V ++ K A
Sbjct: 50 GKTAGFVLPLLEKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAI 109
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + ++ L G +VV TPGR+ D++
Sbjct: 110 YGGAAINPQMQSLSKGCDIVVATPGRLLDLM 140
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNA--KCH 156
GKTA F++ +LQ++ + S + + L+L PTRELAQQ+ ++ H N K
Sbjct: 58 GKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIV 117
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
A GG +V ++ L +G V+V TPGR+ D++
Sbjct: 118 AAFGGVSVNLQMQSLRAGADVLVATPGRLLDLL 150
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
AL N + VLDEAD MLS GF D+++ V + L A Q +L SAT P++V ++ +
Sbjct: 154 ALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEEVRALTAKLLH 213
Query: 444 DPVRILVQKE-ELTLE 488
P+ +Q E E T+E
Sbjct: 214 QPLEYHLQSEQESTIE 229
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
AL+LAPTRELAQQIQ+V G +NA GG IR LE G +V+ TPGR+
Sbjct: 198 ALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLERGAEIVIATPGRLI 257
Query: 247 DMI 255
D +
Sbjct: 258 DFL 260
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
VLDEAD ML GF+ QI + + D QV++ SAT P +V ++ F+ D ++I
Sbjct: 274 VLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWSATWPKEVRNLAEEFLNDYIQI 328
>UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase -
Plasmodium falciparum
Length = 576
Score = 64.9 bits (151), Expect = 2e-09
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 4/205 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT TF I++L +I+ ++ QA+ + PTREL+QQ VV +LN K + +
Sbjct: 210 GKTLTFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAV---PL 266
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
E + G + VGTPG+ D L +F+ T + LF++ ++ S
Sbjct: 267 CERYNK-SGGYQIYVGTPGKTLD-FLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVET 324
Query: 361 FCQLMFKSYYSLLPCLM---MYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCI-ELEEW 528
+ + +S LL K+ D R++ L K + + I E +E
Sbjct: 325 IKRFLPRSCQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQ 384
Query: 529 KLETLCDLYDTLSIAQAVIFCNTRR 603
K L +LY +++I+Q VIF N+++
Sbjct: 385 KYYYLSELYCSMTISQCVIFVNSKK 409
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +++ I + + Q L++ PTRELA Q+ + + +G + A GG +
Sbjct: 51 GKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDF 110
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
R ++ LE H+VVGTPGR+ +
Sbjct: 111 RSQVKALEELPHIVVGTPGRLLE 133
Score = 57.2 bits (132), Expect = 4e-07
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + + I++ VLDEAD+ML GF D+ + K L Q +L SAT+ V ++R +
Sbjct: 137 REYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLFSATLSPPVQMLARKY 196
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
++DP I ++E +T+ Q+Y+
Sbjct: 197 LKDPELIEFEEEGITVPTTVQYYI 220
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-----GDHLNAKCHACI 165
GKT + + +L +ID + Q +I APTRELA QI + + + G + +KC I
Sbjct: 53 GKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCF--I 110
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT+ ++ I +L+ H+VVGTPGR+ D+I
Sbjct: 111 GGTDKQKSIDKLKIQPHLVVGTPGRIADLI 140
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/79 (27%), Positives = 44/79 (55%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+AL + + V+DEAD ML GF + + + D+Q+++ SAT+P+ + + +M
Sbjct: 143 QALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSATIPEKLKPFLKKYM 202
Query: 441 RDPVRILVQKEELTLEGIK 497
+P V+ +++T I+
Sbjct: 203 ENPKYAHVEPKQVTAAKIE 221
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++L+ IK F+LDE D+ML + + + ++F++ + QV++ SAT+ ++ V R F
Sbjct: 183 KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 242
Query: 438 MRDPVRILVQKE-ELTLEGIKQFYM 509
M+DP+ I V E +LTL G++Q+Y+
Sbjct: 243 MQDPMEIFVDDETKLTLHGLQQYYV 267
Score = 58.0 bits (134), Expect = 2e-07
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F ++ LQQ++ + L++ TRELA QI K ++ N K GG +
Sbjct: 94 GKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS 153
Query: 178 VREDIRQLESGV-HVVVGTPGRV 243
+++D L+ H+VVGTPGR+
Sbjct: 154 IKKDEEVLKKNCPHIVVGTPGRI 176
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L+ + ++ VLDEADEML GF D + V L + Q L SATMP+ + +++ F
Sbjct: 141 RGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRF 200
Query: 438 MRDPVRILVQKEELTLEGIKQ--FYMH*IRRMEA 533
M DP + ++ I Q +Y+H +R+ EA
Sbjct: 201 MNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEA 234
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F++ +L QID S + Q L++APTRELA Q+ + + GG
Sbjct: 54 GKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQR 113
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+R L+ G VVVGTPGR+ D I
Sbjct: 114 YDIQLRALKQGAQVVVGTPGRILDHI 139
>UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2;
Lactobacillus|Rep: ATP-dependent RNA helicase -
Lactobacillus plantarum
Length = 444
Score = 64.5 bits (150), Expect = 3e-09
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F+ +L+ + QALILAP++ELA Q VV G ++AK A GG NV
Sbjct: 43 GKTLAFTWPMLEALRVG-EGTQALILAPSQELAMQTTNVVREWGQLIDAKVLAITGGANV 101
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + +L+ V+VGTPGR+ ++I
Sbjct: 102 KRQMEKLKKHPEVIVGTPGRITNLI 126
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F I +L +I S QAL+L PTRELA Q+ K + L N K GG
Sbjct: 53 GKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQP 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ + + L H+VVGTPGR+ D
Sbjct: 113 MGQQLDSLVHAPHIVVGTPGRIQD 136
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+++L +++K+ VLDEAD ML GF D I DV +D Q +L SAT P ++ ++S
Sbjct: 140 KQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPQEIEQISARV 199
Query: 438 MRDPVR--ILVQKEELTLEGIKQFY 506
R P R I EE +E ++FY
Sbjct: 200 QRQPQRFEIADDVEESAIE--QRFY 222
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 64.5 bits (150), Expect = 3e-09
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA FS+ +LQ+I AL+L PTRELA Q+ + + G L GG
Sbjct: 85 GKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGG 144
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYD 249
+ + +R L+ GV VVV TPGR D
Sbjct: 145 QVISQQLRVLKRGVDVVVATPGRALD 170
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ L +++ VLDEADEML GF + + + Q L SAT+P + ++
Sbjct: 174 RKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQTALFSATLPPRIASIAERH 233
Query: 438 MRDPVRILVQKEEL 479
+R+PVR+ + +E++
Sbjct: 234 LREPVRVRIAREKV 247
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 64.5 bits (150), Expect = 3e-09
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GG 171
GKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A ++ ACI GG
Sbjct: 56 GKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGG 115
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMI 255
IR L+ GV VVVGT GRV D I
Sbjct: 116 QEYGSQIRALKQGVKVVVGTTGRVMDHI 143
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/81 (34%), Positives = 48/81 (59%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + ++ VLDEADEML GF D + V +S + Q +L SAT+P D+ ++ ++R+
Sbjct: 148 LQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFSATIPTDIADIIEEYLRN 207
Query: 447 PVRILVQKEELTLEGIKQFYM 509
P +I V+ + T + Q ++
Sbjct: 208 PCKIQVKAKTKTANTVTQKFI 228
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 64.5 bits (150), Expect = 3e-09
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F + IL +I + R C+AL+LAPTRELA QI G I
Sbjct: 106 GKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAARTYGKFTRPSVAVVI 165
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG R++ESGV ++V TPGR+ D +
Sbjct: 166 GGAKPGPQARRMESGVDLLVATPGRLLDHV 195
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
+ + ++ VLDEAD+ML GF I + L Q ++ SATMP + ++ F+RD
Sbjct: 200 IRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPIRALAGEFLRD 259
Query: 447 PVRILVQKEELTLEGIKQ 500
P + V E ++ I Q
Sbjct: 260 PREVAVSVESKPVDRIDQ 277
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 64.5 bits (150), Expect = 3e-09
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTATF ISI ++ + + +ALILAPTREL QI+K ALG + A
Sbjct: 50 GKTATFLISIFTKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIY 109
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + + L++G +V+GTPGR+ D +
Sbjct: 110 GGVDYMKQRDALKAGADIVIGTPGRLIDYL 139
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +3
Query: 249 YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSA--DVQVILLSATMPDDVLE 422
Y ++ ++ V+DEAD M GF + + + L Q +L SAT+ V+E
Sbjct: 138 YLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYDKRQNLLFSATLNTRVME 197
Query: 423 VSRCFMRDPVRILVQKEELTLEGIKQFYMH*IRR 524
++ FM P ++ V E++T E ++Q H R+
Sbjct: 198 LAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRK 231
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 64.5 bits (150), Expect = 3e-09
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ IL+++ + R + + L+L PTRELA Q+ + + + L K
Sbjct: 50 GKTAAFALPILEKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVF 109
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEV 330
GG + I+ L+SG+ +VV TPGR+ D+ L + L M M ++
Sbjct: 110 GGVSSYPQIQALKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDI 169
Query: 331 SRTRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTC 510
+ M+ + L+F + Y P +M L + L + + S ++
Sbjct: 170 KQIVKMLPEKRQNLLFSATY---PSEVMS-LCNSMLKDPLRIQIEEQNSTALNIIQRVIL 225
Query: 511 IELEEWKLETLCDLYDTLSIAQAVIFCNTRR 603
++ ++ K+E L +++ SI QA++F T+R
Sbjct: 226 VDRDK-KMELLNEVFGVESIDQALVFTRTKR 255
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ AL I V DEAD M GF I + K+L Q +L SAT P +V+ +
Sbjct: 141 QNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLFSATYPSEVMSLCNSM 200
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
++DP+RI ++++ T I Q
Sbjct: 201 LKDPLRIQIEEQNSTALNIIQ 221
>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
melanogaster|Rep: GH10652p - Drosophila melanogaster
(Fruit fly)
Length = 818
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
AL+LAPTRELAQQIQ+V I G + + + GG + R LE GV +V+ TPGR+
Sbjct: 233 ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLI 292
Query: 247 DMI 255
D +
Sbjct: 293 DFL 295
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
VLDEAD ML GF+ QI + + + D QV++ SAT P +V +++ F+ + +++
Sbjct: 309 VLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQV 363
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/85 (40%), Positives = 50/85 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA+F I + + + + QALIL PTRELA Q+++ + +G K A G ++
Sbjct: 51 GKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSF 110
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ +L+ H+VVGTPGRV D I
Sbjct: 111 DKQKAELKQKSHIVVGTPGRVLDHI 135
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + + V+DEADEML+ GF +Q+ + K L + +L SAT+P D+ ++SR +M++
Sbjct: 140 LPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQN 199
Query: 447 PVRILVQKEELTLEGIK 497
P I V+ LT I+
Sbjct: 200 PEHIEVKAAGLTTRNIE 216
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 64.1 bits (149), Expect = 4e-09
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI--GGT 174
GKTA F + +LQ ID R Q LI+ PTRELA QI V + L+ + + GG
Sbjct: 55 GKTAAFLLPLLQNIDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQ 114
Query: 175 NVREDIRQLESGVHVVVGTPGRVYD 249
N R L+ H+++GTPGR+ D
Sbjct: 115 NYRIQFNDLKKNPHIIIGTPGRLLD 139
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R L + +K ++DEADEML GF + I + + + Q L SAT+P + ++S FM
Sbjct: 143 RGLDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQTALFSATLPVSIRKLSYKFM 202
Query: 441 RDPVRILVQKEELTLEGIKQFY--MH*IRRMEA 533
+P I + IKQ Y +H I + EA
Sbjct: 203 CNPKEIYINPSISACADIKQSYWLVHGISKHEA 235
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F + I++ + + + +L+L PTRELA Q++ A +L + A G
Sbjct: 73 GKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFG 132
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDMI 255
G ++R +++L+ GV ++V TPGR+ D+I
Sbjct: 133 GVSIRPQVKRLQGGVDILVATPGRLLDLI 161
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ + + +K+ VLDEAD ML GF I V + L + Q ++ SAT + +++
Sbjct: 163 QKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFSATFSTPIKKLALGL 222
Query: 438 MRDPVRI 458
+ DPV I
Sbjct: 223 LNDPVEI 229
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA+F++ I++++ + R +AL+LAPTRELA Q+ + G L + + G
Sbjct: 53 GKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYG 112
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDMI 255
G V I++L+ G ++V TPGR+ D++
Sbjct: 113 GVPVENQIKRLKRGTDILVATPGRLLDLL 141
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++A+ ++ VLDEAD ML GF D I + + D Q +L +AT + V ++ +
Sbjct: 143 QKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFTATADESVEVLAEFY 202
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
+ +P +I V T + I+QF
Sbjct: 203 LNNPTKIKVTPRNSTAKQIRQF 224
>UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Maricaulis maris (strain MCS10)
Length = 787
Score = 64.1 bits (149), Expect = 4e-09
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA F +++ + + D ALI+APTRELA Q+Q+ + L + +C
Sbjct: 49 GKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGEARGQIASC 108
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG + R + + LE G H+VVGTPGR+ D I
Sbjct: 109 VGGMDPRAERKALERGCHIVVGTPGRLRDHI 139
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R AL + +K VLDEADEML GF++ + + A + +L SAT+P + +++R F
Sbjct: 141 RGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASRRTLLFSATVPRAIADIARRF 200
Query: 438 MRDPVRILVQKE 473
+D +RI E
Sbjct: 201 QKDALRISTVSE 212
>UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase PRP28; n=2; Saccharomycetaceae|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 580
Score = 64.1 bits (149), Expect = 4e-09
Identities = 32/73 (43%), Positives = 42/73 (57%)
Frame = +1
Query: 37 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 216
Q +++ + LILAPTRELA QI K GD LN IGG E + + +GVH
Sbjct: 230 QQESNFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVH 289
Query: 217 VVVGTPGRVYDMI 255
+VV TPGR+ D +
Sbjct: 290 IVVATPGRLIDSL 302
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 64.1 bits (149), Expect = 4e-09
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+ +K FVLDE D+ML + + + ++F++ + Q ++ SAT+ D+ V R F
Sbjct: 182 RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKF 241
Query: 438 MRDPVRILVQKE-ELTLEGIKQFYM 509
M+DP+ + V E +LTL G++Q+Y+
Sbjct: 242 MQDPMEVFVDDETKLTLHGLQQYYV 266
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F ++ LQQI+ + L++ TRELA QI K ++ + K GG +
Sbjct: 93 GKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLS 152
Query: 178 VREDIRQLESGV-HVVVGTPGRVYDMI 255
+++D L+ HVVVGTPGR+ ++
Sbjct: 153 IKKDEEVLKKNCPHVVVGTPGRILALV 179
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 64.1 bits (149), Expect = 4e-09
Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++++L ++D +I QA+ +AP+RELA+QIQ+V+ +G I G+
Sbjct: 199 GKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWS 258
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSM--MS 354
R +++ +++GTPG + DM++ + P + + ++ E+ + + +
Sbjct: 259 RNS--RIDK--QILIGTPGTLVDMLMRGSRILDPR--MIRVLVLDEADELIAQQGLGEQT 312
Query: 355 SRFCQLMFKSYYSLLPCLMM---YWKYLDAL*EILYAYLYRRKSLPWKVLNN-FTCIELE 522
R QL+ + ++L ++ D R++ + + + + E
Sbjct: 313 FRIKQLLPPNVQNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSE 372
Query: 523 EWKLETLCDLYDTLSIAQAVIFCNTRRKVGLAH 621
+ K E L LYD L I Q+++FC +RKV H
Sbjct: 373 DQKYEALSALYDCLVIGQSIVFC--KRKVTADH 403
Score = 61.7 bits (143), Expect = 2e-08
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L I++ VLDEADE++++ G +Q + ++L +VQ +L SAT DDV E + F
Sbjct: 284 RILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFADRF 343
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
+ +I ++KE++T++ I+Q Y+
Sbjct: 344 APEANKIFLRKEDITVDAIRQLYL 367
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA FS+ I+ + ID + ++LIL PTRELA QI + + D L K
Sbjct: 51 GKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVY 110
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + + +E G+ ++V TPGR+ D+I
Sbjct: 111 GGVGRQAQVDSIELGLDILVATPGRLLDLI 140
Score = 57.6 bits (133), Expect = 3e-07
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
++ +++FVLDEAD ML GF + + L Q +L SATMP ++ ++ + D
Sbjct: 145 INFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTD 204
Query: 447 PVRILVQKEELTLEGIKQFYMH 512
P +I + E +T++ + Q H
Sbjct: 205 PTKIQITAETVTIDLVNQSVYH 226
>UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=30;
cellular organisms|Rep: DEAD/DEAH box helicase-like
protein - Silicibacter sp. (strain TM1040)
Length = 710
Score = 63.7 bits (148), Expect = 5e-09
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F ++I I D + AL++APTRELA Q+++ + L A +C
Sbjct: 51 GKTVGFGLAIAPTILGEDGTFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASC 110
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG ++R++ R LE G H+VV TPGR+ D I
Sbjct: 111 VGGMDMRDERRALERGAHIVVATPGRLRDHI 141
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
TR ++ + + VLDEADEML GF++ + + + D Q +L SAT+ + +++
Sbjct: 142 TRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFSATVSKPIAALAQT 201
Query: 435 FMRDPVRI-LVQKEE 476
+ D RI + K E
Sbjct: 202 YQNDAQRISTINKSE 216
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA F++ +L ++ T QAL+L PTRELA Q+ + + G L A+ GG
Sbjct: 106 GKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGG 165
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYD 249
+ +R L GV VVV TPGR D
Sbjct: 166 APIGRQVRALVQGVDVVVATPGRALD 191
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + + VLDEADEML GF + I + + Q +L SAT+P + +++R
Sbjct: 195 RGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSATLPPRMDQIARRH 254
Query: 438 MRDPVRILV 464
+RDPVRI +
Sbjct: 255 LRDPVRIQI 263
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G +L + G
Sbjct: 50 GKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFG 109
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDMIL--VVRF 270
G + I++L GV V+V TPGR+ D++ VV+F
Sbjct: 110 GVPINPQIQKLRHGVDVLVATPGRLLDLVQQNVVKF 145
Score = 53.2 bits (122), Expect = 7e-06
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +++ VLDEAD ML GF I + +L A Q ++ SAT D++ E+++ + PV
Sbjct: 146 NQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAKGLVNQPVE 205
Query: 456 ILVQKEELTLEGIKQF 503
I V +KQ+
Sbjct: 206 ISVTPRNAAANTVKQW 221
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 63.7 bits (148), Expect = 5e-09
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + +L ++ Q LIL PTREL +Q+ K + L + N K + GG
Sbjct: 53 GKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMP 112
Query: 178 VREDIRQLESGVHVVVGTPGRV 243
R ++ + G H+VVGTPGR+
Sbjct: 113 FRPQMKSVAHGAHIVVGTPGRI 134
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ +L + ++ VLDEAD ML GF+D+I + + Q +L SAT P + +++
Sbjct: 140 KSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFSATYPKKIATIAKRV 199
Query: 438 MRDPVRILVQK---EELTLEGIKQFY 506
M+DP+RI + EE T+E + FY
Sbjct: 200 MKDPLRIELDSQVHEESTIE--QHFY 223
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 63.7 bits (148), Expect = 5e-09
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN 177
GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D N K GG
Sbjct: 53 GKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQP 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ I+ L+ H++VGTPGRV D +
Sbjct: 113 MGPQIQSLKHSPHIIVGTPGRVMDHV 138
Score = 56.4 bits (130), Expect = 7e-07
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+R + +KL VLDEAD ML GF+D + +F VQ +L SAT + + V++ +
Sbjct: 140 KRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLLFSATFTEQIERVAKQY 199
Query: 438 MRDPVRILVQKEE 476
+ +PV V+ +E
Sbjct: 200 LHNPVTCKVESQE 212
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 63.7 bits (148), Expect = 5e-09
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 11/211 (5%)
Frame = +1
Query: 1 GKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKT F ++IL ++D + QAL LAP+RELA+QIQ V+ ++G C +
Sbjct: 147 GKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIGQF----CTGLVVDAA 202
Query: 178 VREDIRQLESGV--HVVVGTPGRVYDMILVVRFMPTPSNFLF------LMKLMKCCPEVS 333
+ I + E+GV +VVVGTPG V D+I +F + L ++ +
Sbjct: 203 IPGAISR-ETGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCV 261
Query: 334 RTRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNN--FT 507
R ++M+ L+F + + P + Y + R++ L K ++
Sbjct: 262 RVKNMLPKTIQTLLFSATF---PDHVK--SYAEKFAPQANQMKLRQQELTVKGISQMYMD 316
Query: 508 CIELEEWKLETLCDLYDTLSIAQAVIFCNTR 600
C L+E K E LC LY ++I +VIF TR
Sbjct: 317 CPSLKE-KYEVLCKLYGLMTIGSSVIFVKTR 346
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
RR + +KL V+DEAD ML + G +Q V +L +Q +L SAT PD V +
Sbjct: 231 RRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKSYAEK 290
Query: 435 FMRDPVRILVQKEELTLEGIKQFYM 509
F ++ ++++ELT++GI Q YM
Sbjct: 291 FAPQANQMKLRQQELTVKGISQMYM 315
>UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 598
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/94 (34%), Positives = 58/94 (61%), Gaps = 9/94 (9%)
Frame = +1
Query: 1 GKTATFSISI----LQQIDTSIREC-QALILAPTRELAQQIQKVVIALGDHL---NAKCH 156
GKT F + I ++Q+ T+ + C AL++APTRELA+QI ++ + L HL
Sbjct: 58 GKTLAFLLPIFNVLIKQVKTANKNCVYALVIAPTRELAKQIHEIAVQLASHLENNQFSIQ 117
Query: 157 ACIGGTNVREDIRQLES-GVHVVVGTPGRVYDMI 255
CIGG + + D+ ++S G ++++ TPG++ +++
Sbjct: 118 LCIGGVSTKIDVSNIQSQGANILIATPGKLKELM 151
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA + + I+ +++T E ++LI+ PTRELA Q KV LG N K IGG+
Sbjct: 62 GKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSK 121
Query: 178 VREDIRQLESGVHVVVGTPGRV 243
+ + L SG ++V TPGR+
Sbjct: 122 LSDQFDNLSSGPDIIVATPGRL 143
Score = 54.0 bits (124), Expect = 4e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +++ DEAD M GF +Q+ D+ ++L Q++L SAT+P ++ E + ++ P
Sbjct: 155 NRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAEFLKNTLKQPEI 214
Query: 456 ILVQKEELTLEGIKQFYMH 512
I + EE + F+ H
Sbjct: 215 IRLDTEERLSPDLDNFFYH 233
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 63.3 bits (147), Expect = 6e-09
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA + + ++Q + RE +ALILAPTRELAQQ+ + H
Sbjct: 52 GKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTV 111
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPE 327
GGT++R QL GV +++ TPGR+ D + + L L M M P+
Sbjct: 112 YGGTSIRVQQEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPD 171
Query: 328 VSRTRSMMSSRFCQLMFKSYY 390
+ R M L+F + +
Sbjct: 172 IQRIMKRMPEERQTLLFSATF 192
Score = 51.2 bits (117), Expect = 3e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +++ VLDEAD ML GF I + K + + Q +L SAT V ++ M++PV
Sbjct: 150 NQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFSATFETRVKALAYRLMKEPVE 209
Query: 456 ILVQKEELTLEGIKQ 500
+ V T + +KQ
Sbjct: 210 VQVAAANSTADTVKQ 224
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N+I VLDEADEML+ GF + I + L + Q++L SATMP+++ +++ ++ DP
Sbjct: 194 NSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSATMPNEIRNIAKKYLNDPAE 253
Query: 456 ILVQ--KEELTLEGIKQFYMH*IRRMEA 533
IL++ K+E L K Y+ +++A
Sbjct: 254 ILIKSVKKETQLISQKFLYVQRHHKLDA 281
Score = 62.9 bits (146), Expect = 8e-09
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Frame = +1
Query: 1 GKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALG-DHLNAKCHACIGGT 174
GKTA F++ +++++ D + L++ PTRELA Q+ + + + N K A GGT
Sbjct: 100 GKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGT 159
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL 300
+ R I L+ V VVVGTPGR+ D I F N L L
Sbjct: 160 DYRNQIYALKRKVDVVVGTPGRIMDHIRQGTFKVNSINCLVL 201
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA--CIGGT 174
GKT + + I+++ID S E QA+IL+PT EL QI V+ L L K + +G
Sbjct: 51 GKTLAYLLPIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSG 110
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
N++ + +L++ H++VGT GR+ ++I
Sbjct: 111 NIKRQMEKLKNKPHILVGTTGRILELI 137
Score = 37.5 bits (83), Expect = 0.36
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVS 428
++ + NTIK V+DE D++L + V K D Q ++ SATM + LE +
Sbjct: 139 KKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLIFSATMNEKALETA 195
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + + GG +
Sbjct: 52 GKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPI 111
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ R L+ GV +VV TPGR I
Sbjct: 112 MDQKRALKKGVDLVVATPGRCIHFI 136
Score = 61.3 bits (142), Expect = 3e-08
Identities = 30/87 (34%), Positives = 50/87 (57%)
Frame = +3
Query: 240 CI*YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVL 419
CI + L ++++ VLDEADEML+ GF + + V K D V++ SATMP +
Sbjct: 132 CIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSATMPPRLK 191
Query: 420 EVSRCFMRDPVRILVQKEELTLEGIKQ 500
+++ +M + + I + E +T+E I Q
Sbjct: 192 KIAESYMHNSITIKAKSETMTMETIDQ 218
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA ++ IL Q+ + R+ AL+LAPTRELA QI A G HL +
Sbjct: 51 GKTAALALPILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIY 110
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG ++ L+ G H++V TPGR+ D++
Sbjct: 111 GGVGQGNQVKALKRGAHILVATPGRLLDLM 140
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N +++FVLDEAD ML GF + + L Q + SAT+ + E++ + PV
Sbjct: 148 NQLEVFVLDEADRMLDMGFLPDLKRIITQLPTQRQSLFFSATLAPKITELAHSLLSKPVT 207
Query: 456 ILVQKEELTLEGIKQFYM 509
+ V + ++E I+Q M
Sbjct: 208 VNVTPKTTSVEKIQQQLM 225
>UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia ATCC
50803|Rep: GLP_397_1016_18 - Giardia lamblia ATCC 50803
Length = 332
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/85 (38%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F++ ILQ++ AL+L PTRELA QI++ + A G+ L + + IGG +
Sbjct: 110 GKTLCFALPILQELSQDPYGIFALVLTPTRELALQIEQQMNAYGNPLGIQAQSLIGGKDS 169
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
E L+S H+++ TPGR+ M+
Sbjct: 170 VEQSAILDSRPHILIATPGRLAYML 194
>UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|Rep:
DEAD-box RNA helicase - Athelges takanoshimensis
Length = 124
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F++ +LQ + + R +AL+L P+RELA QI + V HL+ K G
Sbjct: 9 GKTAGFTLPVLQYLSETKHPKYRPVRALVLTPSRELAAQILENVKEYSTHLDIKSTVVFG 68
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G I+ L GV ++V TPGR+ D+
Sbjct: 69 GVKASGQIKTLRQGVDILVATPGRLLDL 96
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/81 (41%), Positives = 46/81 (56%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA+F+I IL Q+ A+IL PTRELA QI + A+G +N C IGG +
Sbjct: 53 GKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDN 112
Query: 181 REDIRQLESGVHVVVGTPGRV 243
L+ H++V TPGR+
Sbjct: 113 VTQALILDKRPHIIVATPGRL 133
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADV--QVILLSATMPDDVLEVSRCFMRDPVRI 458
K VLDEAD +L F+ +I + + L Q +L SATM ++ ++ + P
Sbjct: 149 KFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIF 208
Query: 459 LVQKEELTLEGIKQFYMH 512
+ T++ +KQ Y++
Sbjct: 209 EDNSKYDTVDTLKQEYIY 226
>UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 441
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ I+ + AL+++PTRELAQQI + G +NA IGG +
Sbjct: 52 GKTAAFALPIISTLSKDPYGIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAI 111
Query: 181 REDIRQLESGVHVVVGTPGRV 243
+ LE H+VV TPGR+
Sbjct: 112 TDQASALEKNPHIVVATPGRI 132
Score = 34.7 bits (76), Expect = 2.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 228 HSRSCI*YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMP 407
H RS +TR + + ++ VLDE D + G+ D + ++ K L Q + SAT
Sbjct: 135 HLRSASKGNTRFSF--DNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEKRQTLCFSATKS 192
Query: 408 DDV 416
D V
Sbjct: 193 DQV 195
>UniRef50_A0EA02 Cluster: Chromosome undetermined scaffold_85, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_85,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 957
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
++ N I + +LDEAD ML GF+ Q+ D+ + D Q ILLSAT P++V ++S+ F D
Sbjct: 219 VNLNKITMLILDEADRMLDMGFEPQVRDIVSTIREDRQTILLSATWPNEVQQLSKEFCYD 278
Query: 447 PVRILVQK 470
P+ + + K
Sbjct: 279 PILVKIGK 286
Score = 36.3 bits (80), Expect = 0.83
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 17/79 (21%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHL------NAKCHA---------CI--GGTNVREDIRQ 198
LIL PTREL QI ++ L + N K ++ CI G N ++ +
Sbjct: 136 LILVPTRELGVQIYDQLLQLIEFYYGNKKQNEKENSPNLTNLKIVCIYGGNPNKKQQVEL 195
Query: 199 LESGVHVVVGTPGRVYDMI 255
++ G+HV+V TPGR+ ++I
Sbjct: 196 IQKGIHVIVATPGRLIELI 214
>UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=4; Saccharomycetales|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 913
Score = 63.3 bits (147), Expect = 6e-09
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTS--IRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT +F + +L+ I +R LI+ PTRELA QI K + LN C
Sbjct: 366 GKTLSFVLPLLRHIQDQPPLRRGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCF 425
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG+++ I +L+ G ++VGTPGR+ D++
Sbjct: 426 GGSSIESQIAELKKGAQIIVGTPGRIIDLL 455
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R + + VLDEAD M GF+ Q+ VF + D Q +L SAT P + +++ +
Sbjct: 461 RVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAKKIL 520
Query: 441 RDPVRILV 464
+P+ I+V
Sbjct: 521 DNPMEIVV 528
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 63.3 bits (147), Expect = 6e-09
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN-AKCHACIGGTN 177
GKTA F+I +L +ID + + QAL+L PTRELA Q+ + G +L+ GG++
Sbjct: 62 GKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSS 121
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ L G VVVGTPGR+ D
Sbjct: 122 YAVQLAGLRRGAQVVVGTPGRMID 145
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R L + + VLDEADEML+ GF D + + QV L SATMP + ++S +
Sbjct: 149 RATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKY 208
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRMEA 533
+ DP + + + E I Q Y+ R+M+A
Sbjct: 209 LHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240
>UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 585
Score = 62.9 bits (146), Expect = 8e-09
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKT + I ++Q + +TS AL+LAPTRELA QIQK + L +
Sbjct: 225 GKTFAYLIPLIQFVLKLPKLTEETSASGPYALVLAPTRELALQIQKETLKLATPFGLRVC 284
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
CIGG ++ I +L +G +VV PGR+ D++
Sbjct: 285 CCIGGEPMQPQIEELSNGAEIVVAAPGRLKDLL 317
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD-HLNAKCHACIGGTN 177
GK+ F + ++Q ID+ I+E QA+++APTRELAQQ+ L IGGT+
Sbjct: 53 GKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTD 112
Query: 178 VREDIRQLESGVHVVVGTPGRVYDM 252
+ +D ++ + +++GTP R+ D+
Sbjct: 113 IEKDRQRCNAQPQLIIGTPTRINDL 137
Score = 36.3 bits (80), Expect = 0.83
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
LH + V+DEAD M+ G + + + L + + + SAT+P + ++
Sbjct: 143 LHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIAVFSATIPQQLQPFLNKYLSH 202
Query: 447 PVRILVQKEELTLEGIKQFYM 509
P + V ++ + I +FY+
Sbjct: 203 PEYVAVDSKKQNKKNI-EFYL 222
>UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2;
Salinispora|Rep: DEAD/DEAH box helicase-like -
Salinispora arenicola CNS205
Length = 633
Score = 62.9 bits (146), Expect = 8e-09
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ L + ++ VLDEAD ML GF D + + IL D Q +L SATMPD ++ +SR F
Sbjct: 249 QKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTMLFSATMPDPIVALSRRF 308
Query: 438 MRDPVRI 458
+R PV I
Sbjct: 309 LRRPVTI 315
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F + +L+Q+ + QAL++ PTREL Q+ K + A G + G
Sbjct: 159 GKTLGFGVPLLEQVLAPAEGGDGTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYG 218
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G I L SGV ++VGTPGR+ D+
Sbjct: 219 GVAYEPQIEALRSGVEILVGTPGRLLDL 246
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 62.9 bits (146), Expect = 8e-09
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA+F++ +L+Q+ + +AL++ PTRELA Q+ + L K A GG
Sbjct: 71 GKTASFALPVLEQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGG 130
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMI 255
N+ + +E GV ++V TPGR++D+I
Sbjct: 131 ANMNPQRKGVEQGVDILVATPGRLFDII 158
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/89 (30%), Positives = 45/89 (50%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +++ V+DEAD ML GF I V ++++ + Q +L SAT D V ++S +
Sbjct: 163 LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQTMLFSATYSDAVKQLSHKMLNQ 222
Query: 447 PVRILVQKEELTLEGIKQFYMH*IRRMEA 533
P + V E T ++Q +R +A
Sbjct: 223 PEWVNV-AENTTASTVEQLVYRVDKRRKA 250
>UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Rep:
SF2-family helicase - Plasmodium falciparum
Length = 490
Score = 62.9 bits (146), Expect = 8e-09
Identities = 31/85 (36%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + SILQ+++ ++ +LIL PTREL QI + G + +CIGG ++
Sbjct: 119 GKTICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSL 178
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
E + + + H++VGTPGR+ D++
Sbjct: 179 IEQRKSVMTKPHIIVGTPGRISDIL 203
>UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP8 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 619
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/85 (32%), Positives = 51/85 (60%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F++ I+++I A++L PTRELA Q+ + + +G L +GG ++
Sbjct: 201 GKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDM 260
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ ++LE+ H++V TPGR+ D++
Sbjct: 261 MKQAQELEARPHIIVATPGRLCDLL 285
Score = 39.9 bits (89), Expect = 0.068
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR----CFMRDP 449
++ VLDEAD ML+ F ++ +F + A Q L +AT+ + ++E++ + P
Sbjct: 298 VRTLVLDEADRMLTPSFAPELAYLFSQIPAKRQTCLFTATVSEAIMELANKEPPAGKQRP 357
Query: 450 VRILVQKEELTLEGIKQFYM 509
V + LT+ +KQ Y+
Sbjct: 358 FVYRVASDTLTVSNLKQKYL 377
>UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2;
Streptomyces|Rep: ATP-dependent RNA helicase -
Streptomyces coelicolor
Length = 740
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKT +F + L + T + +A+IL PTRELA Q+ + GD L K GG
Sbjct: 110 GKTLSFGLPTLATLAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGG 169
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMI 255
T++ I LE GV V+V TPGR+ D+I
Sbjct: 170 TSMGNQIYALERGVDVLVATPGRLRDII 197
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R A +++ VLDEAD+M GF ++ ++ + A Q +L SATM +++ + +
Sbjct: 199 RGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFSATMENEIKTLVDRY 258
Query: 438 MRDP 449
++DP
Sbjct: 259 LKDP 262
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F + I+Q + R ALIL PTRELAQQ+ + +H + + GGT
Sbjct: 56 GKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGT 115
Query: 175 NVREDIRQLESGVHVVVGTPGRVYD 249
++ +LE G +++ TPGR+ D
Sbjct: 116 SIGVQKNKLEEGADILIATPGRLLD 140
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ VLDEAD ML GF + + + L D Q++L SAT + ++ M PV + V
Sbjct: 154 VLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSATFEKRIKTIAYKLMDSPVEVEVS 213
Query: 468 KEELTLEGIKQ 500
T E +KQ
Sbjct: 214 PANTTAETVKQ 224
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQ-IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA F + IL Q ID +AL++ PTRELA QI + + L H A GG +
Sbjct: 50 GKTAAFLLPILHQLIDRPRGTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVS 109
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+R GV V++GTPGR+ D
Sbjct: 110 IRPQEHAFRRGVDVLIGTPGRLLD 133
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
VLDEAD ML GF I + K + A Q + SATMP + ++R +R+P + + +
Sbjct: 149 VLDEADRMLDMGFLPDIRRILKHIPARRQTLFFSATMPAPIGVLAREMLRNPATVNINRI 208
Query: 474 ELTLEGIKQ 500
GI Q
Sbjct: 209 AAPAAGITQ 217
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTN 177
GKTA F + +L +D R QAL+LAPTRELA Q Q + GG+
Sbjct: 94 GKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSP 153
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
I L+ G VVVGTPGRV D+I
Sbjct: 154 YGPQIGALKRGAQVVVGTPGRVIDLI 179
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
AL + +++ VLDEADEML GF + + + D L SATMP + +V+R ++
Sbjct: 183 ALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALFSATMPAAIEKVAREHLK 242
Query: 444 DPVRILVQKEELTLEGIKQFY 506
DPV++ V E T++ I Q Y
Sbjct: 243 DPVKVAVSTESSTVDTIHQTY 263
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNAKCHACIGGTN 177
GKT + I+++Q + +I + A+I+ PTRELA Q+Q L + KC A IGGT+
Sbjct: 74 GKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTD 133
Query: 178 VREDIRQLESGVHVVVGTPGRV 243
V +D +++ V++GTPGR+
Sbjct: 134 VAKDRKRMNES-RVIIGTPGRL 154
Score = 35.9 bits (79), Expect = 1.1
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSA---DVQVILLSATMPDDVLEVSR 431
R + ++L VLDEAD++ K H V K++ A + Q+I SAT ++ E
Sbjct: 161 RVFDVSKLRLLVLDEADQLYQT--KSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLA 218
Query: 432 CFMRDPVRILVQKEELTLEGIKQF 503
M P+ I + L GI+QF
Sbjct: 219 KVMDKPMLISNSERATVLLGIRQF 242
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 62.5 bits (145), Expect = 1e-08
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA F++ +LQ + T R +ALIL PTRELA QI + V +LN +
Sbjct: 50 GKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVV 109
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDM 252
GG ++ + +L GV V+V TPGR+ D+
Sbjct: 110 FGGVSINPQMMKLRGGVDVLVATPGRLLDL 139
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ A+ + +++ VLDEAD ML GF I V L A Q +L SAT DD+ ++
Sbjct: 142 QNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKL 201
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+ +P+ I V + + + Q
Sbjct: 202 LHNPLEIEVARRNTASDQVTQ 222
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 117
GKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 79 GKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 520 EEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+EWKL TLCDLY+TL+I QAVIF NTRRKV
Sbjct: 113 QEWKLPTLCDLYETLTITQAVIFVNTRRKV 142
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE++ +DFTVSAMHG
Sbjct: 143 DWLTENLLGKDFTVSAMHG 161
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 62.1 bits (144), Expect = 1e-08
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA+F++ IL + I + + L+L+PTREL+ QI A G H+ I
Sbjct: 65 GKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAI 124
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + +R L GV V+V TPGR+ D++
Sbjct: 125 GGVPMGRQVRSLMQGVEVLVATPGRLLDLV 154
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +++ VLDEAD ML GF + I + L Q + SATMP D+ E++ +RD
Sbjct: 159 LKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRD 218
Query: 447 PVRILVQKEELTLEGIKQ 500
P R+ V T E I Q
Sbjct: 219 PARVAVTPVSSTAERINQ 236
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 62.1 bits (144), Expect = 1e-08
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTS--IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F + +LQ++ + +ALIL PTRELA Q V LG L+ K GGT
Sbjct: 69 GKTAAFVLPMLQKLTEAGPAPGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGT 128
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMIL 258
+ + ++ + GV ++V T GR+ D+++
Sbjct: 129 SREQQVQSVSDGVDIIVATHGRLLDLVM 156
Score = 42.7 bits (96), Expect = 0.010
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKIL-SADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 470
VLDEAD +L F + + Q + SAT+P+ V+++++ R+PVR+ +
Sbjct: 169 VLDEADRLLDEDFSASMTALTPYFPDQPPQTVFCSATLPEPVMDLAKRVTRNPVRVEIAA 228
Query: 471 EELTLEGIKQ 500
E T + I+Q
Sbjct: 229 ESFTPKNIRQ 238
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ ILQ++ Q ALIL PTRELA Q+ + A H+N
Sbjct: 50 GKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIY 109
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL 300
GG + ++L+ G ++V TPGR+ + I+ + FL L
Sbjct: 110 GGMKMATQAQKLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVL 154
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + ++ VLDEAD ML GF I + + ++ Q +L SAT V +++ +
Sbjct: 144 LSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFSATFSTAVKKLANDMLDK 203
Query: 447 PVRILVQKEELTLEGIKQ 500
P I K+ T + Q
Sbjct: 204 PKIISADKQNTTAATVSQ 221
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 62.1 bits (144), Expect = 1e-08
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F++ +L + T + R +ALIL+PTRELA QI + + L +
Sbjct: 53 GKTAAFALPLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVF 112
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG +VR I+ L GV ++V TPGR+ D++
Sbjct: 113 GGVSVRPQIQALARGVDILVATPGRLLDLM 142
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSA---DVQVILLSATMPDDVLEVS 428
+RA+ + +LDEAD ML GF + DV KI+ D Q ++ SATMP + ++S
Sbjct: 144 QRAIDLRETRHLILDEADRMLDMGF---VRDVMKIVGKCPDDRQSMMFSATMPKPIEDLS 200
Query: 429 RCFMRDPVRILVQKEELTLEGIKQ 500
+ + +P ++ V +T+E I Q
Sbjct: 201 KKILTNPQKVSVTPAVVTVEKIAQ 224
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 62.1 bits (144), Expect = 1e-08
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + I IL +ID + QA+ILAP+ ELA QI + + N IGG N+
Sbjct: 59 GKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTKDNNISSEPLIGGANI 118
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ I L+ ++V T GR+ ++I
Sbjct: 119 KRQIENLKKRPQIIVATTGRLLEVI 143
Score = 37.1 bits (82), Expect = 0.48
Identities = 16/75 (21%), Positives = 40/75 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+ + + +K V+DE D +++ + + + K + Q++ SAT+ ++ ++ M
Sbjct: 146 KKIKMHEVKTIVVDEFDILIAEEHAENLKHIIKTTLKERQIVCFSATISENTEQIGMELM 205
Query: 441 RDPVRILVQKEELTL 485
++P I +QK + +L
Sbjct: 206 KEPKIIQIQKGQSSL 220
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
VLDEADEML GF D+I ++F L + Q ++ SATMP+ + +++ + +P + + K
Sbjct: 145 VLDEADEMLDMGFLDEIKNIFTFLPKERQTLMFSATMPNGIRKLAEQILNNPKTVSITKS 204
Query: 474 ELTLEGIKQFY 506
E T I Q+Y
Sbjct: 205 ESTNSKITQYY 215
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F + I+ + + L++ PTRELA Q+ + G K GGT
Sbjct: 50 GKTAAFGLPIMSMMKAD-GSVEGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAY 108
Query: 181 REDIRQLESGVHVVVGTPGRVYDMIL 258
+ I +++ +VV TPGR+ D+++
Sbjct: 109 GKQIERIKQ-ASIVVATPGRLQDLLM 133
>UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=1; Pseudoalteromonas tunicata D2|Rep:
ATP-dependent RNA helicase, DEAD box family protein -
Pseudoalteromonas tunicata D2
Length = 416
Score = 62.1 bits (144), Expect = 1e-08
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Frame = +1
Query: 1 GKTATFSISILQQ---IDTS---IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA + + LQ+ +D S +R +AL L PTRELA Q+++ + G LN + +
Sbjct: 51 GKTAAYLLPTLQELSRVDNSAEQVRPVRALFLVPTRELAVQVEESIAKYGKGLNLRTISV 110
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRF 270
GG + + + + G +VV TP R+ D++ V F
Sbjct: 111 FGGVRIPSQVNRFKRGADIVVATPRRLVDLLKVKAF 146
Score = 33.5 bits (73), Expect = 5.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSAT 401
+A +K FV+DEAD ++S G ++ + + Q IL SAT
Sbjct: 144 KAFSLEQVKHFVMDEADRLVSMGIVAELRTILAAMPQAKQQILFSAT 190
>UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein;
n=10; Alphaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9)
Length = 793
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F I+I QI AL +APTRELA Q+ + + L A C
Sbjct: 64 GKTVAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEAGAHIATC 123
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG + R + R L+ G H+VVGTPGR+ D I
Sbjct: 124 VGGMDYRTERRALDRGAHIVVGTPGRLRDHI 154
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/67 (32%), Positives = 41/67 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R +L + ++ VLDEADEML GF++ + + + + ++ SAT+P ++ +++ F
Sbjct: 156 RGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALAKEF 215
Query: 438 MRDPVRI 458
+D VRI
Sbjct: 216 QQDAVRI 222
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G +L + G
Sbjct: 50 GKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFG 109
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G + I++L GV V+V TPGR+ D+
Sbjct: 110 GVPINPQIQKLRHGVDVLVATPGRLLDL 137
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = +3
Query: 252 DTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR 431
+ ++A+ N +++ VLDEAD ML GF I + +L A Q ++ SAT D++ E+++
Sbjct: 138 EQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFSDEIRELAK 197
Query: 432 CFMRDPVRILVQKEELTLEGIKQF 503
+ PV I V +KQ+
Sbjct: 198 GLVNQPVEISVTPRNAAANTVKQW 221
>UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3;
Eumetazoa|Rep: Vasa-related protein CnVAS1 - Hydra
magnipapillata (Hydra)
Length = 797
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Frame = +1
Query: 1 GKTATFSISILQ-------QIDTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAK 150
GKTA F I +L ++ +S+ E QA L++APTRELA QIQK + + K
Sbjct: 402 GKTAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIK 461
Query: 151 CHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG V +RQ++ H++VGTPGR+ D +
Sbjct: 462 PVVIYGGVQVAYHLRQVQQDCHLLVGTPGRLKDFL 496
Score = 37.9 bits (84), Expect = 0.27
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGF----KDQIHDVFKILSADVQVILLSATMPDDVLEV 425
+R + +K +LDEAD ML GF K I+D D ++ SAT P ++ +
Sbjct: 498 KRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPKEDRHTLMFSATFPTEIQNL 557
Query: 426 SRCFMRDPVRILVQKEELTLEGIKQFYM 509
+ F+ + V + + K T I Q M
Sbjct: 558 AAEFLNNYVYLTIGKVGGTHSDITQCIM 585
>UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyostelium
discoideum|Rep: DEAD-box RNA helicase - Dictyostelium
discoideum AX4
Length = 465
Score = 62.1 bits (144), Expect = 1e-08
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 6/205 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ +L +D SI QA+ ++PT+ELA Q +V+ +G N K I V
Sbjct: 120 GKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEV 179
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI----LVVRF--MPTPSNFLFLMKLMKCCPEVSRTR 342
+++ V++GTPG++ + + L V+F M F++K+ +++
Sbjct: 180 PKNVTN-----QVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIVKMKNVPNQIAMIN 234
Query: 343 SMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELE 522
++ S +F + +S+ ++ D I L R++ K+ F E
Sbjct: 235 RLLPSNVKVCLFSATFSMGVEELIKKIVQDPYTSI---RLKRQELSVEKIHQYFIDCGSE 291
Query: 523 EWKLETLCDLYDTLSIAQAVIFCNT 597
+ K L D+Y +S+ Q+++F +T
Sbjct: 292 DNKALILSDIYGFISVGQSIVFVHT 316
>UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111;
Eumetazoa|Rep: ATP-dependent RNA helicase DDX25 - Homo
sapiens (Human)
Length = 483
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +3
Query: 282 IKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
I++FVLDEAD M+ ++GF D + + L ++ Q++L SAT D V + + DP I
Sbjct: 241 IRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERIIPDPNVI 300
Query: 459 LVQKEELTLEGIKQFYM 509
++KEELTL I+Q+Y+
Sbjct: 301 KLRKEELTLNNIRQYYV 317
Score = 58.4 bits (135), Expect = 2e-07
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 9/210 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNAKCHACIGGTN 177
GKTA F +++L +++ Q L LAPT ELA Q +VV +G ++ + I G
Sbjct: 148 GKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNR 207
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVS-------R 336
+ R + +++GTPG V D ++ + +F++ + R
Sbjct: 208 IP---RGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIR 264
Query: 337 TRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCI- 513
+ + S L+F + + W + + + R++ L + + +
Sbjct: 265 IQRALPSECQMLLFSATFE-----DSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLC 319
Query: 514 ELEEWKLETLCDLYDTLSIAQAVIFCNTRR 603
E + K + LC++Y +++I QA+IFC TRR
Sbjct: 320 EHRKDKYQALCNIYGSITIGQAIIFCQTRR 349
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/85 (31%), Positives = 50/85 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + + +L +I+ +++ Q ++LAPTREL QI + V + IGG ++
Sbjct: 47 GKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADI 106
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ + +L+ V+VG+PGR+ ++I
Sbjct: 107 KRQVEKLKKHPRVIVGSPGRILELI 131
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 61.7 bits (143), Expect = 2e-08
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F++ +L +ID + RE Q LILAPTRELA Q+ L A GG
Sbjct: 72 GKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAP 131
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ ++ L G ++V TPGR+ D
Sbjct: 132 MGPQLKALRQGAQILVATPGRLCD 155
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
+T+K VLDEADEML GF + + +F L Q +L SAT+P + E++ + +P
Sbjct: 165 STVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLFSATLPHSIREIAEKHLHEPQH 224
Query: 456 ILVQKEELTLEGIKQFYM 509
+ + + T+ I Q ++
Sbjct: 225 VKIAAKTQTVARIDQAHL 242
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKTA F++ +L+ + + + +AL+L PTRELA Q+ + V G HL+ K G
Sbjct: 54 GKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFG 113
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G + + L G +++ TPGR+ D+
Sbjct: 114 GVKINPQMMALRRGADILIATPGRMMDL 141
Score = 49.6 bits (113), Expect = 8e-05
Identities = 24/82 (29%), Positives = 45/82 (54%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++A+ + +++ VLDEAD ML GF I + IL Q +L SAT ++ ++++
Sbjct: 144 QKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFSATFSPEIRQLAKGL 203
Query: 438 MRDPVRILVQKEELTLEGIKQF 503
+ +P+ I V T ++Q+
Sbjct: 204 VNNPIEISVTPRNATAVSVEQW 225
>UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=2; Proteobacteria|Rep: ATP-dependent
RNA helicase, DEAD box family protein - Alteromonas
macleodii 'Deep ecotype'
Length = 441
Score = 61.7 bits (143), Expect = 2e-08
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Frame = +1
Query: 1 GKTATFSIS----ILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F + ++ Q S ++ +ALILAPTRELA+Q+ ++ LN C +G
Sbjct: 50 GKTFAFLVPAINRLMAQKALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVG 109
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDMIL 258
G N + ++ L H++VGT GRV D +L
Sbjct: 110 GENYNDQVKALRRNPHIIVGTAGRVADHLL 139
>UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 586
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +3
Query: 252 DTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR 431
D R H ++++ VLDEAD ML GF QI + + + Q ++ SAT P +V ++
Sbjct: 247 DLLRKHHLSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLAS 306
Query: 432 CFMRDPVRILVQKEELT 482
F++DP++I V +ELT
Sbjct: 307 KFLKDPIKITVGSQELT 323
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L++APTRELAQQI++V + + GG + R L +GV +V+GTPGR+ D
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247
Query: 250 MI 255
++
Sbjct: 248 LL 249
>UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3;
Piroplasmida|Rep: DEAD box RNA helicase, putative -
Theileria parva
Length = 501
Score = 61.7 bits (143), Expect = 2e-08
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 7/207 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF++++L +++ ++ QAL + PTRELA Q +V+ LG KC +
Sbjct: 149 GKTATFALAMLSKVNVNVPLVQALCICPTRELATQNVQVIQKLGQFTQIKCFLGVPQCPR 208
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
ED Q H+ VGTPG+ D L R M + +M ++ E+ ++ M +
Sbjct: 209 YEDNDQ----YHLYVGTPGKTMD-FLKKRIMNVTN---VVMLVLDEADELINQQNNMGPQ 260
Query: 361 FCQL--MFKSYYSLLPCLMMY----WKYLDAL*EILYAYLYRRKSLPWKVLN-NFTCIEL 519
Q+ F+ ++ + + + + + +R+ L ++ +
Sbjct: 261 VLQIRNFFRGPVQIVLFSATFSDNVYNFATKIAPRAHVIQVKREQLTLDCIDQRYMICND 320
Query: 520 EEWKLETLCDLYDTLSIAQAVIFCNTR 600
+E K L ++Y ++ + Q+VIF N+R
Sbjct: 321 DEDKFNKLSEIYSSMIVGQSVIFVNSR 347
Score = 49.2 bits (112), Expect = 1e-04
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +3
Query: 174 QCP*RYSPTGEWCSCGGGHSRSCI*YDTRRALHANTIKLFVLDEADEMLSR--GFKDQIH 347
QCP RY ++ G ++ + + +R ++ + + VLDEADE++++ Q+
Sbjct: 205 QCP-RYEDNDQYHLYVGTPGKT-MDFLKKRIMNVTNVVMLVLDEADELINQQNNMGPQVL 262
Query: 348 DVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYM 509
+ VQ++L SAT D+V + I V++E+LTL+ I Q YM
Sbjct: 263 QIRNFFRGPVQIVLFSATFSDNVYNFATKIAPRAHVIQVKREQLTLDCIDQRYM 316
>UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 568
Score = 61.7 bits (143), Expect = 2e-08
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQID--------TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA+F I +L I T QALIL PTRELAQQI+ L +C
Sbjct: 316 GKTASFLIPLLAYISKLPKLDEHTKALGPQALILVPTRELAQQIETETNKFAGRLGLRCV 375
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+ +GG ++ + L G +V+ TPGR+ D I
Sbjct: 376 SIVGGRDMNDQAYALRDGAEIVIATPGRLKDCI 408
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/85 (41%), Positives = 46/85 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F I+Q+I+ +AL+L PTRELA+Q+Q + H + GG +
Sbjct: 51 GKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAI 109
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
IRQLE VVV TPGR+ D I
Sbjct: 110 NPQIRQLER-ADVVVATPGRLLDHI 133
Score = 52.8 bits (121), Expect = 9e-06
Identities = 26/91 (28%), Positives = 50/91 (54%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R + +++ VLDEAD ML GF D + ++ +D Q ++ SAT+ D+ +S +
Sbjct: 135 RGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFSATVSKDIQYLSSKY 194
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRME 530
M +P ++ K + + +KQ Y+ ++M+
Sbjct: 195 MNNPSKVFA-KAYVDSDKLKQVYIDVPKKMK 224
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 61.7 bits (143), Expect = 2e-08
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 153 GKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--L 210
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT + + +RQL+ GV V VGTPGRV D++
Sbjct: 211 YGGTPIGQQMRQLDYGVDVAVGTPGRVIDLM 241
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/67 (31%), Positives = 41/67 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SATMP + +++ +
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKY 302
Query: 438 MRDPVRI 458
+ +P+ +
Sbjct: 303 LNNPLTV 309
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 61.3 bits (142), Expect = 3e-08
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA FS+ ILQ+I + +ALILAPTRELA QI++ + + + +
Sbjct: 136 GKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVL 195
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + I+++ G+ V++ TPGR+ D++
Sbjct: 196 GGVSKLSQIKRIAPGIDVLIATPGRLTDLM 225
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +3
Query: 294 VLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 473
VLDEAD ML GF + + + K A+ Q L SATMP ++ ++ +RDPVR+ V +
Sbjct: 239 VLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVRVEVAPQ 298
Query: 474 ELTLEGIKQ 500
T I Q
Sbjct: 299 GATASEITQ 307
>UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Exiguobacterium sibiricum
255-15|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Exiguobacterium sibiricum 255-15
Length = 391
Score = 61.3 bits (142), Expect = 3e-08
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + I L+ ID + Q +I APTREL QI +V+ K A IGG +
Sbjct: 46 GKTLAYVIPALELIDENEPHIQVVITAPTRELVMQIHQVIQLFSQGSGIKSGAFIGGVEL 105
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
+ +L+ ++VGTPGR+ ++I
Sbjct: 106 KRQHERLKKKPQIIVGTPGRLVELI 130
Score = 39.5 bits (88), Expect = 0.089
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR-CF 437
+ + + +KL VLDEAD++ G + D Q+ +SAT+P+ E + F
Sbjct: 133 KKMKMHKVKLIVLDEADQIYESGMSASATRIANSALRDRQLAFISATLPERTAEWGKTLF 192
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRME 530
+P RI V++ T +K Y+ RR++
Sbjct: 193 ANEPERIKVERVMST--QVKFGYIEMSRRLK 221
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 61.3 bits (142), Expect = 3e-08
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I I + I QAL+L PTRELA Q++ + +G K GG
Sbjct: 53 GKTAAFAIPICESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPF 112
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
+ L+ H+VVGTPGRV D
Sbjct: 113 DKQALTLKQKSHIVVGTPGRVLD 135
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L + +K ++DEAD ML GF D + + L ++ ++L SATM + + ++ FM
Sbjct: 142 LKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATMGEALYALTDEFMNS 201
Query: 447 PVRILVQKEELTLEGIKQ 500
PV + ++ T++ I+Q
Sbjct: 202 PVEVKLEDGTETVDSIEQ 219
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F + +L + + R C+ LILAPTREL QI + + A + + K +
Sbjct: 120 GKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIV 179
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG + I++ E G ++V TPGR+ D++
Sbjct: 180 GGVAIGPQIKRAERGADLIVATPGRLIDLL 209
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R+AL + + VLDEAD+ML GF + + +L A+ Q +L SATMP + E+SR +
Sbjct: 211 RKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFSATMPKQMEELSRAY 270
Query: 438 MRDPVRILV 464
+ DP R+ V
Sbjct: 271 LTDPARVEV 279
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 61.3 bits (142), Expect = 3e-08
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL--------GDHLNAKCH 156
GKT TF + L+++D R QAL LAPTRE A Q + + + GD
Sbjct: 86 GKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFKDMDGD-ARGGIE 144
Query: 157 AC--IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
C +GG V+ED +L S HVVVGTPGR M+
Sbjct: 145 TCLLVGGLPVKEDRARLASQPHVVVGTPGRTRQML 179
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 464
+L +LDEAD +LS F+ + + +L QV SAT +L MR P ++++
Sbjct: 190 RLLILDEADALLSGTFERDVLFAYSMLPERKQVCAFSATYSKTLLGDLERLMRAPQKVML 249
Query: 465 QKEELTLEGIKQFY 506
+ L+G++QFY
Sbjct: 250 CESTTALQGVRQFY 263
>UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7;
Trypanosomatidae|Rep: RNA helicase, putative -
Leishmania major
Length = 435
Score = 61.3 bits (142), Expect = 3e-08
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+A +K FV+DE D L + + ++F L + QV++ SATM D++ +V++ F
Sbjct: 178 KAFDTTHVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKF 237
Query: 438 MRDPVRILV-QKEELTLEGIKQFYMH 512
M+D I V Q+ +LTL G+ QFYM+
Sbjct: 238 MKDATEIYVDQRAKLTLHGLAQFYMN 263
Score = 57.6 bits (133), Expect = 3e-07
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 12/211 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE----CQALILAPTRELAQQIQKVVIALGDHL-NAKCHACI 165
GKTA F ++L+Q++ + CQA++L RELA QI++ +L A
Sbjct: 85 GKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFF 144
Query: 166 GGTNVREDIRQLESGV-HVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTR 342
GG E+++QL+ V ++VGTPGR+ +I F T + + + +C +V R
Sbjct: 145 GGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFDRCLEDVKMRR 204
Query: 343 SMMSSRFCQLMFKSYYSLLPCLM------MYWKYLDAL*EILYAYLYRRKSLPWKVLNNF 504
+ F +L + + M + K++ EI Y+ +R L L F
Sbjct: 205 DVQEI-FMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEI---YVDQRAKLTLHGLAQF 260
Query: 505 TCIELEEWKLETLCDLYDTLSIAQAVIFCNT 597
E K L ++ D + QA+IF ++
Sbjct: 261 YMNVTEPEKTRRLAEILDVVEFNQAIIFTSS 291
>UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 598
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVR 455
N + VLDEAD+ML GF+ QI + +S D Q ++ SAT P ++ +++ F+ DPV
Sbjct: 271 NRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMMFSATWPKEIQQLAADFLVDPVH 330
Query: 456 ILVQKEELTL-EGIKQ 500
+++ ++LT IKQ
Sbjct: 331 MIIGNKDLTTNSNIKQ 346
Score = 45.6 bits (103), Expect = 0.001
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F I + I + L+L+PTRELAQQI +V D+L +
Sbjct: 174 GKTAAFLIPAMVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLF 233
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL 300
GG L +VV TPGR+ D I + NFL L
Sbjct: 234 GGAGRGPQANDLRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVL 278
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGT 174
GKTA F ++ LQQ++ S C L++ TRELA QI K ++ K GG
Sbjct: 90 GKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGM 149
Query: 175 NVREDIRQLESGV-HVVVGTPGRVYDMI 255
+++D L+SG H+VVGTPGR+ +I
Sbjct: 150 AIQKDEETLKSGTPHIVVGTPGRILALI 177
Score = 60.1 bits (139), Expect = 6e-08
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ L+ +K FVLDE D+ML + + + ++F+ QV++ SAT+ D+ V + F
Sbjct: 180 KKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKF 239
Query: 438 MRDPVRILVQKE-ELTLEGIKQFYMH 512
M+DP+ + V E +LTL G++Q Y++
Sbjct: 240 MQDPMEVYVDDEAKLTLHGLQQHYVN 265
>UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX59;
n=34; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX59 - Homo sapiens (Human)
Length = 619
Score = 61.3 bits (142), Expect = 3e-08
Identities = 26/76 (34%), Positives = 48/76 (63%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+K+ V+DEAD ML GF+ Q+ D+ + + D Q IL+SAT+P + +++ + +PVRI+
Sbjct: 347 VKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRII 406
Query: 462 VQKEELTLEGIKQFYM 509
++ L ++Q +
Sbjct: 407 TGEKNLPCANVRQIIL 422
Score = 53.2 bits (122), Expect = 7e-06
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F + ++ + + ALIL PTRELA QI++ L L K +GG
Sbjct: 252 GKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLP 311
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ + +L+ V V++ TPGR+ D+I
Sbjct: 312 LPPQLYRLQQHVKVIIATPGRLLDII 337
>UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;
Pezizomycotina|Rep: ATP-dependent RNA helicase dbp-8 -
Neurospora crassa
Length = 626
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/85 (41%), Positives = 46/85 (54%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F++ ILQQ + +IL PTRELA QI + VIAL K GG ++
Sbjct: 244 GKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADM 303
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
R+ L H+V+ TPGR+ D I
Sbjct: 304 RKQAIDLAKRPHLVIATPGRLADHI 328
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 60.9 bits (141), Expect = 3e-08
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKT F I L+ ID I Q LILAPTRE+A QI +V ++G + + K IGG
Sbjct: 45 GKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGLA 104
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMI 255
+ D +++ + + VG PGR+ +I
Sbjct: 105 IENDKKKV-NNCQIAVGAPGRIRHLI 129
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L ++LFVLDEAD+++ F+ I+ +F L QVI SAT P D+ + +M
Sbjct: 134 LKVENVRLFVLDEADKLMETSFQKDINYIFSKLPLSKQVIASSATYPGDLEIFLQTYMCS 193
Query: 447 PVRILVQKEELTLEGIKQF 503
PV + E L G++QF
Sbjct: 194 PVLVSPNNNEPILIGLRQF 212
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 60.9 bits (141), Expect = 3e-08
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F+I +LQ ++ R+ ++LI+ PTRELA QI + A G H
Sbjct: 131 GKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIF 190
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG N L+ G+ +++ TPGR+ D++
Sbjct: 191 GGVNQNPQTASLQKGIDILIATPGRLLDLM 220
Score = 56.8 bits (131), Expect = 6e-07
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILS---ADVQVILLSATMPDDVLEVSRCF 437
LH I+ FVLDEAD ML GF IHD+ KIL+ Q + SATMP ++ ++
Sbjct: 225 LHLRNIEFFVLDEADRMLDMGF---IHDIRKILAELPKKKQSLFFSATMPPEITRLAASI 281
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+ +PV + V T+E I Q
Sbjct: 282 LHNPVEVSVTPVSSTVEIINQ 302
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 60.9 bits (141), Expect = 3e-08
Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKT F I L+ + DT Q LIL PTRELA Q+ V L +GGT+
Sbjct: 76 GKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTS 135
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
R I+ + SG VVV TPGR+ D
Sbjct: 136 ERNQIQSIRSGARVVVATPGRLED 159
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 249 YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVS 428
Y RR + + +++ VLDEAD M+ GF I + + L D Q + SATM V +
Sbjct: 160 YMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQTLCFSATMGPAVSGIV 219
Query: 429 RCFMRDPVRI 458
+ + + VR+
Sbjct: 220 QDCLYNAVRV 229
>UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5;
Clostridium|Rep: DEAD/DEAH box helicase-like -
Clostridium cellulolyticum H10
Length = 437
Score = 60.9 bits (141), Expect = 3e-08
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIALGDHLNAKCHACIGGT 174
GKT + + + ++ +E QALIL PT ELA Q+ Q +++ + A IG
Sbjct: 52 GKTLAYLLPLFMKLSAEKKEMQALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDV 111
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
N+ I +L+ H++VGTPGR+ ++I
Sbjct: 112 NIMRQIDKLKLKPHIIVGTPGRILELI 138
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+R + A+TIK ++DEAD +L D I + K + Q+++ SAT+ +E +
Sbjct: 140 KRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTLKERQIVMCSATISKKTVERAMPL 199
Query: 438 MRDPVRILVQKEELTLEGIKQFY 506
M++P+ I + + + I+ Y
Sbjct: 200 MKEPLVIESKADMGVPDAIEHLY 222
>UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 552
Score = 60.9 bits (141), Expect = 3e-08
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQA-------LILAPTRELAQQIQKVVIALGDHLNAKCHA 159
GKT F + L + + E A L+L+PTRELAQQI V+ G
Sbjct: 141 GKTIAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVC 200
Query: 160 CIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT+ I L+SGV +V+GTPGR+ D+I
Sbjct: 201 LYGGTSKGPQISALKSGVDIVIGTPGRMKDLI 232
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 276 NTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM-RDPV 452
N + VLDEAD ML GF+ ++ + ++ Q ++ SAT P V ++++ FM +P+
Sbjct: 303 NDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQEFMDPNPI 362
Query: 453 RILVQKEEL 479
++++ E+L
Sbjct: 363 KVVIGSEDL 371
Score = 37.5 bits (83), Expect = 0.36
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT+ I L+SGV +V+GTPGR+ D+I
Sbjct: 266 GGTSKGPQISALKSGVDIVIGTPGRMKDLI 295
>UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1022
Score = 60.9 bits (141), Expect = 3e-08
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +++L +ID ++ Q + LAPT ELA+QI +VV +G + N K H I G N
Sbjct: 669 GKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGN 728
Query: 178 VREDIRQLESGVHVVVGTPGRVYDMILVVRFM-PTPSNFLFL-----MKLMKCCPEVSRT 339
+ +R + +V+GTPG D + + + P+ L L M + ++S T
Sbjct: 729 MAA-MRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTT 787
Query: 340 RSMM----SSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFT 507
M S ++F + Y P + K + + L R + + +
Sbjct: 788 IYNMVEDASDSVQSMLFSATYD-EPVINFATKIIK---NAIVVMLKREEQALPNIKQFYV 843
Query: 508 CIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+ K + +LY L++A +VIFC+T+ V
Sbjct: 844 QCACRDSKYAAIVNLYSGLAVASSVIFCHTKASV 877
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEML-SRGFKD---QIHDVFKILSADVQVILLSATMPDDVLEVS 428
+ + + I+ VLDEAD M+ +GF D I+++ + S VQ +L SAT + V+ +
Sbjct: 757 KCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFA 816
Query: 429 RCFMRDPVRILVQKEELTLEGIKQFYM 509
+++ + +++++EE L IKQFY+
Sbjct: 817 TKIIKNAIVVMLKREEQALPNIKQFYV 843
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 60.9 bits (141), Expect = 3e-08
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 178 VR--EDIRQLESGVHVVVGTPGRV 243
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L ++ F+LDE D+ML S + + ++FK+ D QV++ SAT+ ++ V + FM+
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ 245
Query: 444 DPVRILVQKE-ELTLEGIKQFYM 509
DP+ I V E +LTL G+ Q Y+
Sbjct: 246 DPMEIYVDDEAKLTLHGLVQHYI 268
>UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1072
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQ-ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT F + +L+ + S E A++++PTRELA QI K LN + C+
Sbjct: 452 GKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCV 511
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG+++ EDI ++ G VV+ TPGR+ D++
Sbjct: 512 GGSSISEDIAAMKKGAEVVICTPGRMIDLL 541
Score = 41.5 bits (93), Expect = 0.022
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +3
Query: 216 CGGGHSRSCI*YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLS 395
C G + + R + V+DEAD M GF+ Q+ + + Q +L S
Sbjct: 532 CTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKVLFS 591
Query: 396 ATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 500
AT P + ++R + P+ I V + I Q
Sbjct: 592 ATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQ 626
>UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA
helicase - Bacillus halodurans
Length = 389
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT + + +L + + + QALILAPT+ELA QI +V L + IGG N+
Sbjct: 51 GKTLAYLLPMLTKTEELPEQTQALILAPTQELAMQIVEVAKQLTATTSITVLPLIGGANI 110
Query: 181 REDIRQL-ESGVHVVVGTPGRVYDMI 255
+ + +L + HV VGTPGR+ +++
Sbjct: 111 KRQVEKLKKKKPHVAVGTPGRILELM 136
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG K GG ++
Sbjct: 94 GKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQSI 152
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
+ LE ++ TPGR+ D
Sbjct: 153 KRQCDLLEKKPKAMIATPGRLLD 175
Score = 59.7 bits (138), Expect = 8e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 464
++ VLDE+DEML GF D I ++FK L Q +L SATMP+ + ++ + +P + +
Sbjct: 188 QIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSATMPEPIKALAMKILNEPAFVKI 247
Query: 465 QKEELTLEGIKQFY 506
++T + I+Q Y
Sbjct: 248 TPTDVTNQDIEQQY 261
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQ----QIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA+FS+ I+Q Q +TS + ALIL PTRELA Q+ V A H +
Sbjct: 60 GKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSA 119
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG ++ + +L GV +++ TPGR+ D +
Sbjct: 120 VVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 152
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/81 (25%), Positives = 42/81 (51%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ + +++ VLDEAD ML GF + + +L + Q +L SAT ++ +++ +
Sbjct: 154 QKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTY 213
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
+R+P I V + + Q
Sbjct: 214 LRNPQTIEVARSNAAASTVTQ 234
>UniRef50_Q4AEL1 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=1; Chlorobium phaeobacteroides
BS1|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium phaeobacteroides BS1
Length = 356
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDV-LEVSRC 434
R L + +K VLDEADEM++ GFK +I ++ K + +L +ATMP DV L +
Sbjct: 37 RGVLSLDDLKYLVLDEADEMINMGFKAEIDEILKSCKPAITKLLFTATMPKDVKLLIEEY 96
Query: 435 FMRDPVRILVQKEELTLEGIKQFYM 509
+ D I + KEEL E I+ + +
Sbjct: 97 LVADASEIRINKEELVNEKIQHYLL 121
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
A GG + + I++L+ HVVV TPGR+ D++
Sbjct: 3 AVYGGAPIDDQIQKLKRATHVVVATPGRLIDLL 35
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQI----QKVVIALGDHLNAKCHACIG 168
GKT +F + I+Q ++ ++E QA+I+APTRELA QI + +++ D++ K G
Sbjct: 51 GKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDYI--KTSLITG 108
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDM 252
G + I +++ +V+GTPGR+ D+
Sbjct: 109 GMDRERQIGRVKVSPQIVIGTPGRILDL 136
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/78 (28%), Positives = 46/78 (58%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+AL + +K +++DEAD+ML GF ++ + + L +Q+++ SAT+P+ + + +M
Sbjct: 140 QALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQMMVFSATIPEKLQPFLKKYM 199
Query: 441 RDPVRILVQKEELTLEGI 494
+P V ++ T + I
Sbjct: 200 NNPRYAHVDPKQQTAKKI 217
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
++ V+DEAD ML GF I +FK+ Q + SATMP ++ +++ F++DPVRI
Sbjct: 148 VQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPEITRLTKQFLKDPVRIE 207
Query: 462 VQKEELTLEGIKQ 500
+ T E I Q
Sbjct: 208 ASRPATTNENITQ 220
Score = 53.6 bits (123), Expect = 5e-06
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA F++ ++ ++ R +AL++APTRELA Q+ IGG
Sbjct: 51 GKTAAFTLPLIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGG 110
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCCPEVSR 336
+ + ++L+ GV V++ TPGR+ D + + T FL + M M P++ R
Sbjct: 111 VSFGDQEKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIER 170
Query: 337 TRSMMSSRFCQLMFKS 384
M + L F +
Sbjct: 171 IFKMTPPKKQTLFFSA 186
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTN 177
GKT F I +++ ID QAL+LAPTRELA QIQ + L + C+ GG
Sbjct: 61 GKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAP 120
Query: 178 VREDIRQLESGVHVVVGTPGRVYD 249
+ + I L+ +VV TPGR+ D
Sbjct: 121 IEKQITTLKKHPQIVVATPGRLMD 144
Score = 56.0 bits (129), Expect = 1e-06
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL---SADVQVILLSATMPDDVLEVS 428
RR + + ++ VLDEAD ML GF IHDV +IL + + L SAT+ +V+++S
Sbjct: 148 RRTVKLDKVETVVLDEADRMLDMGF---IHDVTRILDQIKSRKNLGLFSATISREVMDIS 204
Query: 429 RCFMRDPVRILVQKEELTLEGIKQF 503
+ RDPV I+V+ +E I+Q+
Sbjct: 205 WVYQRDPVEIVVRPDEENKPDIQQY 229
>UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|Rep:
Helicase - Limnobacter sp. MED105
Length = 539
Score = 60.5 bits (140), Expect = 4e-08
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 13/213 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA FS+ IL ++ E +ALIL PTRELA Q+ V +
Sbjct: 69 GKTAGFSLPILNRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRST 128
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL-----MKLMKCC 321
GG ++ I+ L GV +V+ TPGR+ D + L L M M
Sbjct: 129 VVYGGVDINPQIQTLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFL 188
Query: 322 PEVSRTRSMMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNN 501
P++ R +++ L+F + +S P + K ++ + RR + +
Sbjct: 189 PDLQRIINLLPKTRQNLLFSATFS--PEIQKLAKSFMVSPTLI--EVARRNATSENIKQV 244
Query: 502 FTCIELEEWKLETLCDLYDTLSIAQAVIFCNTR 600
++ EE K +C L + +++Q ++F NT+
Sbjct: 245 IFALDSEEDKRMAVCHLIQSKALSQVIVFSNTK 277
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/81 (32%), Positives = 45/81 (55%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+++++ +++ VLDEAD ML GF + + +L Q +L SAT ++ ++++ F
Sbjct: 163 QKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKTRQNLLFSATFSPEIQKLAKSF 222
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
M P I V + T E IKQ
Sbjct: 223 MVSPTLIEVARRNATSENIKQ 243
>UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n=3;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 625
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/87 (36%), Positives = 46/87 (52%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ ILQ + AL+L P+RELA QI IA G L + +GG
Sbjct: 51 GKTAAFALPILQTLAADAYGVFALVLTPSRELAYQIIDQFIAFGAPLRVRTMLAVGGVPT 110
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILV 261
+ L++ H+V TPGR+ ++ V
Sbjct: 111 ETQVDALKARPHIVAATPGRLRHLLEV 137
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA-KCHACIGGTN 177
GKT + ++ LQ S + + L++ PTRELA Q+ + LG+ L + K + +GGT+
Sbjct: 74 GKTLIYVVTALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGTD 133
Query: 178 VREDIRQLESGVHVVVGTPGRVYDM 252
V D +L + HV +GTPGR+ +
Sbjct: 134 VTRDREKLRN-CHVAIGTPGRLLQL 157
Score = 42.3 bits (95), Expect = 0.013
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEM-LSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L+ + +KL VLDEAD++ ++ + ++ + +L QVI SAT ++ E M
Sbjct: 163 LNMSMVKLLVLDEADQLYVTASLQKTVNALIAVLPLQRQVIACSATFDQNLDEKIAKMME 222
Query: 444 DPVRILVQKEELTLEGIKQF 503
PV I + L GI+QF
Sbjct: 223 KPVLISNSERATVLLGIRQF 242
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 60.5 bits (140), Expect = 4e-08
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA F++ L+++ + + LIL PTRELA QI ++ L + KC +GG
Sbjct: 216 GKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGG 275
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYD 249
+VRE L S +VV TPGR+ D
Sbjct: 276 LSVREQEVVLRSMPDIVVATPGRMID 301
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ + +LDEAD +L GF +I ++ ++ Q +L SATM ++V E+ + + P+R+
Sbjct: 314 LAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLS 373
Query: 462 VQKEELTLEGIKQFYMH*IRRMEAGN 539
G+ + + IRR N
Sbjct: 374 ADPSARRPPGLTEEVVR-IRRTREAN 398
>UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase PRP28; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 738
Score = 60.5 bits (140), Expect = 4e-08
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA F I +L I D ALI+APTRELAQQI+ L KC
Sbjct: 364 GKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCV 423
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+ +GG +V E L G +++ TPGR+ DM+
Sbjct: 424 SIVGGRSVEEQQFALRDGAEIIIATPGRLKDMV 456
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,952,092
Number of Sequences: 1657284
Number of extensions: 17983823
Number of successful extensions: 49906
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 45775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49256
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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