Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20117
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MTQ0 Cluster: Putative uncharacterized protein; n=1; ...    40   0.049
UniRef50_A2E8V5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_Q804W5 Cluster: Coagulation factor V; n=2; Takifugu rub...    33   7.5  

>UniRef50_Q8MTQ0 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 44

 Score = 40.3 bits (90), Expect = 0.049
 Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -2

Query: 517 MIRSLWG*EIIMLILNAQRSGGIQLVIYKM-SGFT*YE 407
           M+R   G  II+LILNAQRSG +QLV YK+ SG   YE
Sbjct: 1   MMRIFGGVVIIILILNAQRSGRVQLVYYKINSGVVYYE 38


>UniRef50_A2E8V5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 905

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 420 KPLILYITNCIPPLRWAFKINIIISHP 500
           KP + Y  +C+PP   +FKI I I HP
Sbjct: 157 KPFLTYTASCVPPSFTSFKITISIDHP 183


>UniRef50_Q804W5 Cluster: Coagulation factor V; n=2; Takifugu
            rubripes|Rep: Coagulation factor V - Fugu rubripes
            (Japanese pufferfish) (Takifugu rubripes)
          Length = 1802

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -1

Query: 548  WTPYTSCGGVNDKIFMGVRNNNVNFK 471
            W PYT   GV  KIFMG  NNN + K
Sbjct: 1742 WHPYTDDDGVPAKIFMGNTNNNDHVK 1767


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,520,783
Number of Sequences: 1657284
Number of extensions: 12351556
Number of successful extensions: 30431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30429
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)