Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55F10 Cluster: PREDICTED: similar to CG4702-PA;...    82   1e-14
UniRef50_Q9VGD1 Cluster: CG4702-PA; n=6; Endopterygota|Rep: CG47...    60   5e-08
UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2; ...    35   2.6  
UniRef50_Q3LWX1 Cluster: Envelope glycoprotein; n=1; Human immun...    34   3.5  
UniRef50_Q61UH0 Cluster: Putative uncharacterized protein CBG053...    33   6.1  
UniRef50_A5D084 Cluster: Putative transcriptional regulator; n=1...    33   8.0  

>UniRef50_UPI0000D55F10 Cluster: PREDICTED: similar to CG4702-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG4702-PA - Tribolium castaneum
          Length = 299

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 42/76 (55%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = +1

Query: 295 ERKFAEKPNALKKVAXXXXXXIQTNSISD----GFSWTNFLSSILQTFFVNGGV-TGPNK 459
           ERKFAEKPNA+KKVA      IQTN IS+    GFSW+N L  ++Q  F  GG   GPNK
Sbjct: 64  ERKFAEKPNAIKKVALDDLDDIQTNQISENGGGGFSWSNLLGMLMQMIFSPGGAHQGPNK 123

Query: 460 SDTLDTESSAPSPWTH 507
           S+ LD    APSPW +
Sbjct: 124 SEGLDDTGVAPSPWAN 139



 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
 Frame = +3

Query: 564 DGIDKVDNGSSPMQGILAV---ILSSVLGAK---DPDQVASMAKQAG-EFFSIVMNLLDA 722
           +G+D      SP   +L+V   IL+++LG     + D +  +   +  +F +IV+NLLDA
Sbjct: 125 EGLDDTGVAPSPWANLLSVGLKILTAILGGGAGGNSDGIDKVDNGSPMQFINIVVNLLDA 184

Query: 723 LKASFSHRSLAAR 761
           LK SFSHRS+AAR
Sbjct: 185 LKTSFSHRSMAAR 197



 Score = 38.7 bits (86), Expect = 0.16
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 110 RMYSKTTGWALVALICSSTILQTIAYP 190
           +MY ++ GWAL AL+ SS+I+ TI+YP
Sbjct: 19  QMYKQSVGWALFALLVSSSIVSTISYP 45


>UniRef50_Q9VGD1 Cluster: CG4702-PA; n=6; Endopterygota|Rep:
           CG4702-PA - Drosophila melanogaster (Fruit fly)
          Length = 286

 Score = 60.5 bits (140), Expect = 5e-08
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +1

Query: 265 PVPQQEEIVQERKFAEKPNALKKVAXXXXXX-IQTNSISD------GFSWTNFLSSILQT 423
           PV + E +   RKFA KPNA KKVA       ++TN I +      GF+W+N LS+++ T
Sbjct: 43  PVYRDESVA--RKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVM-T 99

Query: 424 FFVNGGVTGPNKSDTLDTE-SSAPSPWTH 507
            F NG V  P KSD +D+      SPW +
Sbjct: 100 MFFNGAVNSPTKSDDVDSSIGLGGSPWAN 128



 Score = 50.0 bits (114), Expect = 7e-05
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +3

Query: 564 DGIDK-VDNGSSPMQGILAV---ILSSVLGAKDPDQVASMAKQAG---EFFSIVMNLLDA 722
           D +D  +  G SP   ++++   I++++LG   P          G   +F  IVMNLLDA
Sbjct: 113 DDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVMNLLDA 172

Query: 723 LKASFSHRSLAAR 761
           LK SFSHRSL AR
Sbjct: 173 LKTSFSHRSLTAR 185



 Score = 40.3 bits (90), Expect = 0.053
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +3

Query: 504 SLIAMGLKIXXXXXXXXXXXDGIDKVDNGSSPMQGILAVI 623
           ++I+MGL+I           DGIDKVDNG SPMQ I  V+
Sbjct: 128 NVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVM 167


>UniRef50_Q22M46 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 4844

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +1

Query: 247  ILHNSLPVPQQEEIVQERKFAEKPNALKKVAXXXXXXIQTNSISDGFSWTNFLSSILQTF 426
            I  N L    +E+ +Q++ F +K N+LKK A            S+G S + +LS ILQ+ 
Sbjct: 4133 IKENKLDPESKEQEIQDQIF-QKYNSLKKEALQALRTNTLKDESEGISKSKYLSYILQSL 4191

Query: 427  FVNGGVTGPNKSDTL-DTESSAPSPW 501
            F+   ++     D L ++E+    P+
Sbjct: 4192 FLWKNISNIKWDDILKNSEAFIDKPY 4217


>UniRef50_Q3LWX1 Cluster: Envelope glycoprotein; n=1; Human
           immunodeficiency virus 1|Rep: Envelope glycoprotein -
           Human immunodeficiency virus 1
          Length = 129

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 239 GPQYYITHCQYHNRKRSSKNVNSLKNQTLLKKS 337
           GPQY + +C++ +R+R  KN     +QT+LK S
Sbjct: 5   GPQYQLNYCKWQSRRRRGKNSIWKISQTMLKPS 37


>UniRef50_Q61UH0 Cluster: Putative uncharacterized protein CBG05328;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG05328 - Caenorhabditis
           briggsae
          Length = 731

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 250 LHNSLPVPQQEEIVQE----RKFAEKPNALKKVAXXXXXXIQTNSISDGFSW 393
           LH++   P +EEI++E    +KF +KP  L  V       +Q+N  +   SW
Sbjct: 518 LHSNDYWPSEEEIIEEGIPLQKFCQKPGDLAYVGNGTYHWVQSNDFTTNISW 569


>UniRef50_A5D084 Cluster: Putative transcriptional regulator; n=1;
           Pelotomaculum thermopropionicum SI|Rep: Putative
           transcriptional regulator - Pelotomaculum
           thermopropionicum SI
          Length = 286

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 662 DLVGIFCTEYRRQNDSQYTLHW*RSIVDFVNAICSRSTTEK 540
           D+V  FC +YR + +  YT++W R I    N + +  T E+
Sbjct: 170 DIVVYFCKKYREKYNVNYTVNWGRDIPTVKNKLIANYTPEQ 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,774,307
Number of Sequences: 1657284
Number of extensions: 16355486
Number of successful extensions: 45646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45638
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)