SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00026
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog...    93   6e-18
UniRef50_O60739 Cluster: Eukaryotic translation initiation facto...    81   3e-14
UniRef50_P41567 Cluster: Eukaryotic translation initiation facto...    79   1e-13
UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor...    69   1e-10
UniRef50_A6SQI8 Cluster: Translation initiation factor 3; n=15; ...    61   2e-08
UniRef50_Q6MVC9 Cluster: Probable translation initiation factor ...    61   3e-08
UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog...    60   7e-08
UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza sat...    54   3e-06
UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|R...    54   3e-06
UniRef50_Q5CLR9 Cluster: Translation initiation factor SUI1; n=2...    52   1e-05
UniRef50_Q38LF1 Cluster: Eukaryotic translation initiation facto...    51   3e-05
UniRef50_Q40537 Cluster: Nicotiana tabacum (clone 12) activating...    50   4e-05
UniRef50_Q00T99 Cluster: Translation initiation factor SUI1, put...    50   5e-05
UniRef50_Q86AU4 Cluster: Similar to translation initiation facto...    48   2e-04
UniRef50_Q5KLG3 Cluster: Suppressor of initiator codon mutations...    45   0.002
UniRef50_Q4QAL1 Cluster: Translation factor SUI1, putative; n=5;...    40   0.059
UniRef50_A7ES43 Cluster: Predicted protein; n=1; Sclerotinia scl...    39   0.10 
UniRef50_UPI000150A7AF Cluster: Translation initiation factor SU...    38   0.31 
UniRef50_UPI0000498D7F Cluster: Translation initiation factor; n...    36   0.96 
UniRef50_Q01DM1 Cluster: Transducin / WD-40 repeat protein-like;...    36   1.3  
UniRef50_A0CXT2 Cluster: Chromosome undetermined scaffold_30, wh...    35   1.7  
UniRef50_Q9X1T8 Cluster: Transcriptional regulator, biotin repre...    33   5.1  

>UniRef50_Q9VZS3 Cluster: Protein translation factor SUI1 homolog;
           n=11; Bilateria|Rep: Protein translation factor SUI1
           homolog - Drosophila melanogaster (Fruit fly)
          Length = 110

 Score = 93.1 bits (221), Expect = 6e-18
 Identities = 42/49 (85%), Positives = 47/49 (95%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSS 255
           MSIQNLNT DPFADAIK ++DD+QDGLVH+RIQQRNGRKTLTTVQGLS+
Sbjct: 1   MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSA 49



 Score = 92.3 bits (219), Expect = 1e-17
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTV+EHPEYGEVLQLQGDQRENICQWLTK GL KP+QLKVHGF
Sbjct: 68  GTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110



 Score = 39.9 bits (89), Expect = 0.059
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFAC 305
           EYDLKKIVR+CKKEFAC
Sbjct: 50  EYDLKKIVRSCKKEFAC 66


>UniRef50_O60739 Cluster: Eukaryotic translation initiation factor
           1b; n=44; Fungi/Metazoa group|Rep: Eukaryotic
           translation initiation factor 1b - Homo sapiens (Human)
          Length = 113

 Score = 80.6 bits (190), Expect = 3e-14
 Identities = 34/43 (79%), Positives = 40/43 (93%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTV+EHPEYGEV+QLQGDQR+NICQ+L + G+VK EQLKVHGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
 Frame = +1

Query: 112 SIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLTTVQGLSSN 258
           +IQNL +FDPFADA K  +      +  +H+RIQQRNGRKTLTTVQG++ +
Sbjct: 3   TIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53


>UniRef50_P41567 Cluster: Eukaryotic translation initiation factor
           1; n=53; Eukaryota|Rep: Eukaryotic translation
           initiation factor 1 - Homo sapiens (Human)
          Length = 113

 Score = 79.0 bits (186), Expect = 1e-13
 Identities = 33/43 (76%), Positives = 39/43 (90%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTV+EHPEYGEV+QLQGDQR+NICQ+L + GL K +QLKVHGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
 Frame = +1

Query: 112 SIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLTTVQGLSSN 258
           +IQNL++FDPFADA K  +      +  +H+RIQQRNGRKTLTTVQG++ +
Sbjct: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADD 53


>UniRef50_UPI0000DD7914 Cluster: PREDICTED: similar to suppressor of
           initiator codon mutations, related sequence 1; n=1; Homo
           sapiens|Rep: PREDICTED: similar to suppressor of
           initiator codon mutations, related sequence 1 - Homo
           sapiens
          Length = 288

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTV+EHPEYGEV+Q QGDQ  NICQ+L + GL K +QLKVH F
Sbjct: 246 GTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 288



 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 31/65 (47%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
 Frame = +1

Query: 70  SVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSE--DDVQDGLVHVRIQQRNGRKTLTTVQ 243
           +VS ++++ ++ + +IQNL++FDPFADA K  +      +  +H+RIQQRNGRKTLTTVQ
Sbjct: 166 AVSTEEKE-SYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQ 224

Query: 244 GLSSN 258
           G++ +
Sbjct: 225 GIADD 229


>UniRef50_A6SQI8 Cluster: Translation initiation factor 3; n=15;
           Pezizomycotina|Rep: Translation initiation factor 3 -
           Botryotinia fuckeliana B05.10
          Length = 169

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = +1

Query: 115 IQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           I+NL  FDPFA+A +   D      +H+RIQQRNGRKTLTTVQGL
Sbjct: 60  IENLKVFDPFAEADEEPGDQKAAEYIHIRIQQRNGRKTLTTVQGL 104



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLT-KSGL-VKPEQLKVHGF 436
           GT+V     G+V+QLQGDQR+++ ++LT K GL ++ + +KVHGF
Sbjct: 125 GTIVNDVIMGDVIQLQGDQRKDVQEFLTGKDGLELEAKTIKVHGF 169


>UniRef50_Q6MVC9 Cluster: Probable translation initiation factor
           SUI1; n=2; Neurospora crassa|Rep: Probable translation
           initiation factor SUI1 - Neurospora crassa
          Length = 117

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIK--SSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           MSI+NL T+DPFA+A +  S +       +H+RIQQRNGRKTLTTVQG+
Sbjct: 1   MSIENLKTYDPFAEADEEDSGQTKQTQEYIHIRIQQRNGRKTLTTVQGI 49



 Score = 37.5 bits (83), Expect = 0.31
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
 Frame = +2

Query: 308 GTVV--EHPEYGEVLQLQGDQRENICQWLTK--SGL-VKPEQLKVHGF 436
           GT++  E  + G+V+QLQGDQR  I  +LT    GL +  + +KVHGF
Sbjct: 70  GTIIGDEDSKMGDVIQLQGDQRAKIKDFLTNKDEGLGLDAKTIKVHGF 117


>UniRef50_Q94JV4 Cluster: Protein translation factor SUI1 homolog 2;
           n=42; Eukaryota|Rep: Protein translation factor SUI1
           homolog 2 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 113

 Score = 59.7 bits (138), Expect = 7e-08
 Identities = 24/43 (55%), Positives = 35/43 (81%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 71  GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113



 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 25/47 (53%), Positives = 30/47 (63%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           + +Q    FDPFADA            VH+R+QQRNGRK+LTTVQGL
Sbjct: 4   LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGL 50


>UniRef50_Q7XN79 Cluster: OSJNBa0089N06.3 protein; n=6; Oryza
           sativa|Rep: OSJNBa0089N06.3 protein - Oryza sativa
           (Rice)
          Length = 580

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           G VVE  E G+++QLQGD R ++  +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580



 Score = 43.2 bits (97), Expect = 0.006
 Identities = 18/20 (90%), Positives = 20/20 (100%)
 Frame = +1

Query: 190 VHVRIQQRNGRKTLTTVQGL 249
           VHVR+QQRNGRKTLTTVQG+
Sbjct: 498 VHVRVQQRNGRKTLTTVQGI 517


>UniRef50_Q00RG6 Cluster: H0303G06.6 protein; n=2; Oryza sativa|Rep:
           H0303G06.6 protein - Oryza sativa (Rice)
          Length = 241

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           G VVE  E G+++QLQGD R ++  +L K+G+V+ + +KVHGF
Sbjct: 199 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 241



 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +1

Query: 130 TFDPFADAI---KSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           TFD FADA     ++        VHVR+QQRNGRKTLTTVQG+
Sbjct: 136 TFDAFADAEGEDAAAGRGAGGDYVHVRVQQRNGRKTLTTVQGI 178


>UniRef50_Q5CLR9 Cluster: Translation initiation factor SUI1; n=2;
           Cryptosporidium|Rep: Translation initiation factor SUI1
           - Cryptosporidium hominis
          Length = 112

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 31/42 (73%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 433
           GT+++ PE+G +LQ+QGD R N+ ++L    +V  +++K+HG
Sbjct: 70  GTIIDDPEHGPILQIQGDHRHNVARFLVGENIVNSDEIKIHG 111



 Score = 44.4 bits (100), Expect = 0.003
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 139 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
           PF     S       G VH+R QQRNG+K+LTTVQGLS+    +R
Sbjct: 13  PFVVDALSEVGKSSSGYVHIRNQQRNGKKSLTTVQGLSAEFDLKR 57


>UniRef50_Q38LF1 Cluster: Eukaryotic translation initiation factor
           1; n=9; Apicomplexa|Rep: Eukaryotic translation
           initiation factor 1 - Toxoplasma gondii
          Length = 163

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 31/42 (73%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 433
           GTV+E PE+G ++QLQGDQR  + ++L +  +   +Q+++HG
Sbjct: 121 GTVIEDPEHGSIIQLQGDQRHAVKEFLEREAICSVDQIRIHG 162



 Score = 39.9 bits (89), Expect = 0.059
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKS------SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNM 261
           + IQN    DPFA+          S   +   L ++R QQRNGRK++TTVQGL  ++
Sbjct: 48  LDIQNFGVSDPFANDTSQAGGAGGSSTHLIRKLRNIRNQQRNGRKSVTTVQGLDKSL 104


>UniRef50_Q40537 Cluster: Nicotiana tabacum (clone 12) activating
           factor DNA sequence; n=1; Nicotiana tabacum|Rep:
           Nicotiana tabacum (clone 12) activating factor DNA
           sequence - Nicotiana tabacum (Common tobacco)
          Length = 81

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
           + +Q  + FDPFA+A  S     ++  VH+RIQQRNG+K+LTTVQG
Sbjct: 35  IDVQIPSAFDPFAEAKDSGAPGAKE-YVHIRIQQRNGKKSLTTVQG 79


>UniRef50_Q00T99 Cluster: Translation initiation factor SUI1,
           putative; n=1; Ostreococcus tauri|Rep: Translation
           initiation factor SUI1, putative - Ostreococcus tauri
          Length = 129

 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 433
           G +VE  E+G+++QLQGDQR+NI Q+L    + K   +KVHG
Sbjct: 86  GCIVEDSEHGDIVQLQGDQRKNIAQFLVDERISKKALIKVHG 127



 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = +1

Query: 169 DDVQDGLVHVRIQQRNGRKTLTTVQGLS 252
           D VQ   +H+R+QQRNGRK+LTTVQGL+
Sbjct: 39  DSVQGNYIHIRMQQRNGRKSLTTVQGLN 66


>UniRef50_Q86AU4 Cluster: Similar to translation initiation factor 3
           (EIF3); Sui1p; n=2; Dictyostelium discoideum|Rep:
           Similar to translation initiation factor 3 (EIF3); Sui1p
           - Dictyostelium discoideum (Slime mold)
          Length = 110

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = +1

Query: 112 SIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGH 285
           SIQNLN+ DPFA+      D      VH+RI QR+GRK +TTV+GL   +  ++   H
Sbjct: 3   SIQNLNSADPFAEDSNLGGDS-GISYVHIRIFQRSGRKAVTTVEGLPPKIDLKKILKH 59



 Score = 41.1 bits (92), Expect = 0.025
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +2

Query: 284 MQEGVRVQGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           +++ +   G +VE    G +++LQGD+R+ I  +L +  + +   +K+HGF
Sbjct: 60  LKKSLNCNGNIVEEENLGMIIKLQGDKRKEIALFLIEEKISQKPSIKIHGF 110


>UniRef50_Q5KLG3 Cluster: Suppressor of initiator codon mutations,
           putative; n=1; Filobasidiella neoformans|Rep: Suppressor
           of initiator codon mutations, putative - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 159

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 8/55 (14%)
 Frame = +1

Query: 115 IQNLN-TFDPFADA-----IKSSEDDV--QDGLVHVRIQQRNGRKTLTTVQGLSS 255
           ++NL   FDPFA         S E  V  ++  +H+R+QQRNGRKTLTTVQG+ S
Sbjct: 26  VENLGPAFDPFAPVNDLNDTPSIEKAVGSKNDKIHIRLQQRNGRKTLTTVQGIPS 80



 Score = 35.9 bits (79), Expect = 0.96
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = +2

Query: 332 YGEVLQLQGDQRENICQWLTKSGLVKPEQLK----VHGF 436
           +G+VLQLQGDQR    Q+L  SG+V  ++ K    VHG+
Sbjct: 121 HGDVLQLQGDQRVAAKQFLIDSGIVAQKEAKDLIVVHGY 159


>UniRef50_Q4QAL1 Cluster: Translation factor SUI1, putative; n=5;
           Trypanosomatidae|Rep: Translation factor SUI1, putative
           - Leishmania major
          Length = 107

 Score = 39.9 bits (89), Expect = 0.059
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 127 NTFDPFADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
           +T +   +  + +E  V  G  VH+R+QQR G+K +TTVQGL+  +  RR
Sbjct: 3   DTVEAIVNQQRETERAVLGGQKVHIRVQQRKGKKFVTTVQGLNQKLNFRR 52



 Score = 38.7 bits (86), Expect = 0.14
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVH 430
           GTV+  P+ G V+QLQG+  ENI Q+L    +     L++H
Sbjct: 65  GTVISTPDAGTVIQLQGNWSENIKQFLLDEHMATENNLEIH 105


>UniRef50_A7ES43 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 165

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
 Frame = +2

Query: 311 TVVEHPEYGEVLQLQGDQRENICQWL-TKSGL-VKPEQLKVHG 433
           ++VE   +GEV+Q+QGD R+ I ++L TK GL +  E + VHG
Sbjct: 123 SIVEDKVFGEVIQIQGDYRQKIYEFLTTKDGLELDEENVVVHG 165


>UniRef50_UPI000150A7AF Cluster: Translation initiation factor SUI1
           family protein; n=1; Tetrahymena thermophila SB210|Rep:
           Translation initiation factor SUI1 family protein -
           Tetrahymena thermophila SB210
          Length = 101

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 311 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 433
           T+VE  E  +V++L GD R  I Q+L++ G+   + + +HG
Sbjct: 60  TIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVDNITIHG 100



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 169 DDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           DD Q   +H+R++QR GRK  TTV+G+
Sbjct: 13  DDFQTH-IHIRVEQRRGRKCFTTVEGI 38


>UniRef50_UPI0000498D7F Cluster: Translation initiation factor; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: Translation
           initiation factor - Entamoeba histolytica HM-1:IMSS
          Length = 110

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +1

Query: 187 LVHVRIQQRNGRKTLTTVQGL 249
           +VH RIQQRNGRK +TT+ G+
Sbjct: 27  IVHFRIQQRNGRKCVTTITGI 47



 Score = 34.7 bits (76), Expect = 2.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 335 GEV-LQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GEV  +L GDQR+    +    G++ PE +K+HGF
Sbjct: 76  GEVEFKLSGDQRKAASNFFLAEGILLPENIKIHGF 110


>UniRef50_Q01DM1 Cluster: Transducin / WD-40 repeat protein-like;
           n=2; Ostreococcus|Rep: Transducin / WD-40 repeat
           protein-like - Ostreococcus tauri
          Length = 1073

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -1

Query: 391 GEPLANILSLVAL--KLQHLAVLRVLHDRTLHANSFLHARTIFFRSYSRKGLAP*SASYA 218
           G+ +AN++ ++ L  K +   VLR     T H     H R    R  +R+GLAP   S  
Sbjct: 33  GDDVANLVVVLVLVEKAREFIVLRA--GFTAHDRLIAHDRPASERHRARRGLAPAHDSRR 90

Query: 217 RFVAGYGRGLNHLERRPPS 161
           R   G+ RG     RRPP+
Sbjct: 91  R-TQGHTRGAPQTPRRPPT 108


>UniRef50_A0CXT2 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 107

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 308 GTVVEHPEYGE--VLQLQGDQRENICQWLTKSGLVKPEQLKVHG 433
           G + +  +YG+   ++L GD R+ I ++L + G+   + +KVHG
Sbjct: 63  GIISKDEDYGDQVTIRLTGDNRQQIAKFLVEEGIALQDNIKVHG 106


>UniRef50_Q9X1T8 Cluster: Transcriptional regulator, biotin
           repressor family; n=4; Thermotogaceae|Rep:
           Transcriptional regulator, biotin repressor family -
           Thermotoga maritima
          Length = 175

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 200 VSSNETGVRR*LRCKAFPRI*PEEDRAGMQEGVRVQGTVVEHPEYGEVLQ-LQGDQRENI 376
           ++  ++GV R +  K  P    EE    ++ G R+   +VEHP YGE+   +     E +
Sbjct: 64  LAGGKSGVSRLVAVKHAPEEIKEELLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEV 123

Query: 377 CQWLTKSGLVKPEQL 421
            +++    + K E L
Sbjct: 124 LKFVNLMEMAKTEPL 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,594,209
Number of Sequences: 1657284
Number of extensions: 12807491
Number of successful extensions: 34152
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34126
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -