Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30184.Seq
(455 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary... 73 2e-12
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary... 62 5e-09
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ... 55 8e-07
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula... 53 3e-06
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ... 52 6e-06
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola... 52 8e-06
UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=... 51 1e-05
UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S riboso... 42 0.006
UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, wh... 42 0.008
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos... 39 0.044
UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza sativa... 38 0.077
UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniper... 37 0.18
UniRef50_Q8ST62 Cluster: Similarity to 60S ribosomal protein L35... 35 0.72
UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S riboso... 34 1.3
UniRef50_Q8Y3Q8 Cluster: Lmo2775 protein; n=5; Listeria|Rep: Lmo... 33 2.9
UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia intestina... 33 2.9
UniRef50_A4RQ51 Cluster: Putative uncharacterized protein; n=2; ... 32 5.1
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary... 32 5.1
UniRef50_A6VJ00 Cluster: Putative uncharacterized protein; n=1; ... 31 8.9
>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
(Human)
Length = 123
Score = 73.3 bits (172), Expect = 2e-12
Identities = 45/110 (40%), Positives = 58/110 (52%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M K+K +LR K + LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 209 YHQKMKVNLRNHYKNRNTSL*I*EPRRPVLCARLLLNTKQRSRRGKRSER 358
+Q K NLR YK + P++ R LN + + + K+ +R
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKK-TRAMRRRLNKHEENLKTKKQQR 109
Score = 58.8 bits (136), Expect = 5e-08
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
DLR KKTRAMR+ L KHE +KT+K+ RK+ L+P R YAVKA
Sbjct: 82 DLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123
>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
Eukaryota|Rep: 60S ribosomal protein L35 -
Caenorhabditis elegans
Length = 123
Score = 62.1 bits (144), Expect = 5e-09
Identities = 35/73 (47%), Positives = 40/73 (54%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 209 YHQKMKVNLRNHY 247
+Q K LR Y
Sbjct: 61 INQTQKQELRKFY 73
Score = 40.3 bits (90), Expect = 0.019
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
DLR KKTRA+R+ LT HE +++ K+ K R +AVKA
Sbjct: 82 DLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 218
Score = 54.8 bits (126), Expect = 8e-07
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +2
Query: 38 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 217
VK EL++K NLRV KV GG +SK+ +I +RK IARV V +Q
Sbjct: 77 VKTFELQSKSKTDLTKQLEELKTELLNLRVQKVAGGSSSKILRINSLRKDIARVLTVMNQ 136
Query: 218 KMKVNLRNHYKNRN 259
K + NLR YK ++
Sbjct: 137 KQRANLREFYKGKS 150
>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
organisms|Rep: 60S ribosomal protein L35 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 203
Score = 53.2 bits (122), Expect = 3e-06
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +1
Query: 178 KKSYRTCLHCVSPEDEGQSXXXXXXXXXXXXDLRAKKTRAMRKALTKHEAKIKTRKEIRK 357
+KS L ++ Q DLR + TRA+R+ LTKHEA +KT K+ +K
Sbjct: 114 RKSIARVLTVINANQRAQLRLFYKNKKYTPLDLRPRLTRALRRRLTKHEATLKTEKQRKK 173
Query: 358 KSLFPPRVYAVK 393
+ FP R YAVK
Sbjct: 174 EIHFPQRKYAVK 185
Score = 48.0 bits (109), Expect = 1e-04
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +2
Query: 20 TVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARV 199
T+ KVK +L K + LRV K+ G +SK +I VRK+IARV
Sbjct: 61 TMSTSKVKAGQLWGKSKEELSKQLEELKTELSQLRVQKIAAGASSKTQRIHDVRKSIARV 120
Query: 200 YIVYHQKMKVNLRNHYKNR 256
V + + LR YKN+
Sbjct: 121 LTVINANQRAQLRLFYKNK 139
>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
protein - Plasmodium falciparum
Length = 124
Score = 52.0 bits (119), Expect = 6e-06
Identities = 32/76 (42%), Positives = 39/76 (51%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M VK ELRT + LR++K G A K SKI VRK +ARV V
Sbjct: 1 MSNVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSA-KNSKIHGVRKNVARVLTV 59
Query: 209 YHQKMKVNLRNHYKNR 256
Y+QK K+ LR YKN+
Sbjct: 60 YNQKRKMELRQLYKNK 75
>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
Alveolata|Rep: 60S ribosomal protein L35 - Theileria
annulata
Length = 142
Score = 51.6 bits (118), Expect = 8e-06
Identities = 29/72 (40%), Positives = 37/72 (51%)
Frame = +2
Query: 35 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 214
K++ ELR K RV+KVT SKLSKI +VRKA+A+V VY+
Sbjct: 22 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYN 81
Query: 215 QKMKVNLRNHYK 250
Q+ K R YK
Sbjct: 82 QRKKEEARKKYK 93
Score = 36.3 bits (80), Expect = 0.31
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
+LR K TRA RK LT + +KT KE ++ P R YA+ A
Sbjct: 101 NLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYALLA 142
>UniRef50_Q4Q8V7 Cluster: 60S ribosomal protein L35, putative; n=5;
Trypanosomatidae|Rep: 60S ribosomal protein L35,
putative - Leishmania major
Length = 127
Score = 51.2 bits (117), Expect = 1e-05
Identities = 32/112 (28%), Positives = 51/112 (45%)
Frame = +2
Query: 38 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 217
+K +LR K + LRV + TGG ++L +IR +RK+IAR+ V +Q
Sbjct: 5 MKIKDLREKSKDDLLKTLTEYKKELSQLRVVQQTGGAETRLGRIRPIRKSIARILTVLNQ 64
Query: 218 KMKVNLRNHYKNRNTSL*I*EPRRPVLCARLLLNTKQRSRRGKRSERNLSSH 373
+ NL+ Y +R + R L R L K+ + K S + +H
Sbjct: 65 NERSNLKMFYADRKLRCKTPKVLRTKLTHRRRLALKENEKNRKTSRQMRQAH 116
Score = 38.3 bits (85), Expect = 0.077
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 274 LRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
LR K T R AL ++E KT +++R+ FP RVYAVK
Sbjct: 87 LRTKLTHRRRLALKENEKNRKTSRQMRQAHKFPKRVYAVK 126
>UniRef50_UPI00002376D7 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Homo sapiens|Rep: PREDICTED: similar
to 60S ribosomal protein L35 - Homo sapiens
Length = 106
Score = 41.9 bits (94), Expect = 0.006
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 274 LRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
LR KKTRA+R+ L+KHE + +K+ + + L P R AVKA
Sbjct: 60 LRPKKTRAVRRPLSKHEENLTIKKQQQSEQLSPVRKCAVKA 100
>UniRef50_A0DBI8 Cluster: Chromosome undetermined scaffold_44, whole
genome shotgun sequence; n=9; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_44, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 125
Score = 41.5 bits (93), Expect = 0.008
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
DLR KKTRA+R+ LT+ E KT+++ ++ + FP R +A+K
Sbjct: 84 DLRGKKTRAIRQRLTRSERAQKTQRQWKRLNNFPLRKFALK 124
>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L35 -
Cryptosporidium hominis
Length = 126
Score = 39.1 bits (87), Expect = 0.044
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
DLR K TRA R+ALT +AK T K +K FP R +A+ A
Sbjct: 85 DLRKKLTRAKRRALTPQQAKKMTVKASKKALNFPKRKFAIIA 126
Score = 37.9 bits (84), Expect = 0.10
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 116 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHY 247
+LRV + TG +KLS+I VVRK IAR+ + Q+ +LR +
Sbjct: 33 SLRVIQSTGTAPNKLSRINVVRKGIARILTILSQRNIKSLREKH 76
>UniRef50_Q0D991 Cluster: Os06g0732000 protein; n=9; Oryza
sativa|Rep: Os06g0732000 protein - Oryza sativa subsp.
japonica (Rice)
Length = 290
Score = 38.3 bits (85), Expect = 0.077
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 17 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 196
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 197 VY 202
Y
Sbjct: 163 AY 164
>UniRef50_Q2KL02 Cluster: 60S ribosomal protein L35; n=1; Siniperca
chuatsi|Rep: 60S ribosomal protein L35 - Siniperca
chuatsi (Chinese perch)
Length = 57
Score = 37.1 bits (82), Expect = 0.18
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKK-SLFPPRV 381
DLR KKTR +R+ L KHE ++T+K ++ L P++
Sbjct: 4 DLRPKKTRVLRRRLNKHEESLRTKKTAEERPPLLDPQI 41
>UniRef50_Q8ST62 Cluster: Similarity to 60S ribosomal protein L35;
n=2; Encephalitozoon cuniculi|Rep: Similarity to 60S
ribosomal protein L35 - Encephalitozoon cuniculi
Length = 122
Score = 35.1 bits (77), Expect = 0.72
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 387
+LR K R+ R+ALTK + + KTR++ + S FP ++A
Sbjct: 81 ELRPKLNRSKRRALTKTQLRRKTRRQRARMSKFPRVIFA 119
>UniRef50_UPI0000EBD742 Cluster: PREDICTED: similar to 60S ribosomal
protein L35; n=1; Bos taurus|Rep: PREDICTED: similar to
60S ribosomal protein L35 - Bos taurus
Length = 98
Score = 34.3 bits (75), Expect = 1.3
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 119 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNH 244
L + K+T V+SK SKI V K I+R+ V +Q K NLR +
Sbjct: 17 LGIIKMTSSVSSKPSKILGVCKFISRLLTVVNQTQKENLRKY 58
>UniRef50_Q8Y3Q8 Cluster: Lmo2775 protein; n=5; Listeria|Rep:
Lmo2775 protein - Listeria monocytogenes
Length = 722
Score = 33.1 bits (72), Expect = 2.9
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -2
Query: 247 VVVSKIDLHLLVIHNVNTCDSFSYNTDLGQFRSNSTSNFSNP 122
V +SK DL + +I+ N D FSY+++ G FR T N ++P
Sbjct: 504 VALSKEDLRVNIIYAENNQDYFSYDSNTGDFR---TGNITDP 542
>UniRef50_Q7QRA8 Cluster: GLP_2_9191_9649; n=2; Giardia
intestinalis|Rep: GLP_2_9191_9649 - Giardia lamblia ATCC
50803
Length = 152
Score = 33.1 bits (72), Expect = 2.9
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 175 CKKSYRTCLHCVSPEDEGQSXXXXXXXXXXXXDLRAKKTRAMRKALTKHEAKIKTRKEIR 354
CKK L ++ + ++ R + T AMR LT+ + ++ K ++
Sbjct: 79 CKKDVARVLTVINQKARDEARAAFEGAEHIPKTFRPRLTHAMRCQLTEKQKRLLPSKLMK 138
Query: 355 KKSLFPPRVYAVK 393
+K FP YAVK
Sbjct: 139 RKLQFPKLKYAVK 151
>UniRef50_A4RQ51 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 306
Score = 32.3 bits (70), Expect = 5.1
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 137 TGGVASKLSKIRVVRKAIARVYIVYHQK------MKVNLRNHYKNRNTSL*I*EPRRPVL 298
T G AS+ SKI KA+ Y ++K MK +L HYK+RN S RP +
Sbjct: 174 TSGHASRHSKIHTAEKAVQCTYPGCNKKFTRADNMKQHLETHYKDRNRS----GATRPTV 229
Query: 299 CARLLLNTKQRS 334
AR ++ + S
Sbjct: 230 SARRSSSSSKHS 241
>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 143
Score = 32.3 bits (70), Expect = 5.1
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Frame = +2
Query: 116 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQK-----MKVNLRNHYKNRNTSL*I*E 280
++RV +VTGG +S++ +R+AIA+ + YHQK K L+ + + + +L I +
Sbjct: 64 DIRV-RVTGG--GHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIAD 120
Query: 281 PRRP 292
RRP
Sbjct: 121 SRRP 124
>UniRef50_A6VJ00 Cluster: Putative uncharacterized protein; n=1;
Methanococcus maripaludis C7|Rep: Putative
uncharacterized protein - Methanococcus maripaludis C7
Length = 743
Score = 31.5 bits (68), Expect = 8.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 262 CISVFVVVSKIDLHLLVIHNVNTCDSFSYNTDLGQF 155
CI +FVV + L +L ++ +N+ +SF Y+ L F
Sbjct: 50 CIYIFVVPGYLILRILKLNKINSLESFLYSVGLSVF 85
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,224,971
Number of Sequences: 1657284
Number of extensions: 4680597
Number of successful extensions: 14794
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14737
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -