Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0021.Seq
         (421 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8R9W4 Cluster: ELP3 component of the RNA polymerase II...    32   4.1  
UniRef50_A6Q4T2 Cluster: Putative uncharacterized protein; n=1; ...    32   5.4  

>UniRef50_Q8R9W4 Cluster: ELP3 component of the RNA polymerase II
           complex, consists of an N- terminal BioB/LipA-like
           domain and a C-terminal histone acetyltransferase
           domain; n=3; Thermoanaerobacter|Rep: ELP3 component of
           the RNA polymerase II complex, consists of an N-
           terminal BioB/LipA-like domain and a C-terminal histone
           acetyltransferase domain - Thermoanaerobacter
           tengcongensis
          Length = 354

 Score = 32.3 bits (70), Expect = 4.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 174 NLKFDNFRIYNITVLHNNKTDIMCREGKHTALYYEEAV 61
           +LK D  RIY   V+ N   + M +EGK+T L  E+A+
Sbjct: 182 SLKPDFVRIYPTLVIRNTYLEKMYKEGKYTPLSLEQAI 219


>UniRef50_A6Q4T2 Cluster: Putative uncharacterized protein; n=1;
           Nitratiruptor sp. SB155-2|Rep: Putative uncharacterized
           protein - Nitratiruptor sp. (strain SB155-2)
          Length = 331

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 376 FFFISSGWPYFSNCN*DFDLIFHETDIFMVRYQCA 272
           FF  S  WP+F++ N  +  IF    IFMV + CA
Sbjct: 179 FFAFSQTWPHFNSDNFGYRYIFGVLWIFMVGFFCA 213


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,571,616
Number of Sequences: 1657284
Number of extensions: 5818040
Number of successful extensions: 9861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9860
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)