Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0023
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.025
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   1.2  
UniRef50_Q2HHJ9 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_A0DK88 Cluster: Chromosome undetermined scaffold_54, wh...    34   2.9  
UniRef50_A5JZ31 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_UPI000155C996 Cluster: PREDICTED: similar to growth inh...    33   6.6  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -1

Query: 320 GRXNHSPSGGPYARLPTRAIKKKFALYANIIIDLA 216
           G  NHSPSG PYA LPTRA  K  +L+  +I+ L+
Sbjct: 2   GDGNHSPSGRPYASLPTRAKMKLTSLFIFVIVALS 36


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -1

Query: 362  RQRLGSVPGIAEVHGR 315
            RQRLGS PGIAEVHGR
Sbjct: 970  RQRLGSAPGIAEVHGR 985


>UniRef50_Q2HHJ9 Cluster: Putative uncharacterized protein; n=2;
           Pezizomycotina|Rep: Putative uncharacterized protein -
           Chaetomium globosum (Soil fungus)
          Length = 1010

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 167 VASYLDISYRVTYIIHVNNVYATXVTGNDYL-ELILGWKVW 48
           V SY+  +Y +T ++H +N  A  V   DY  +L LGW  W
Sbjct: 146 VGSYVGNNYDITGVVHSHNALAIQVHPTDYYHDLALGWVDW 186


>UniRef50_A0DK88 Cluster: Chromosome undetermined scaffold_54, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_54,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 480

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -2

Query: 604 RSSYKYISVLAI*TVLFPLPVDTGFLPRTPTWPTRFGQRKVAAINSYLDVFCWYD 440
           + +Y++ISVL    V++PLP   G L RT     +F    +   NS L +F  +D
Sbjct: 70  QGNYQFISVLKEQIVIYPLPYICGSLYRTVQHQNQFSNYSLTRDNSSLYIFGGFD 124


>UniRef50_A5JZ31 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 8834

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 497  ETCGPRGSAREKACIHGKREQNGLNCKYADVFIAGPETNERARDGLPSVMGINRSCREH 673
            E CGP+ S  EK  I G +    +   +A +F +  +TN+  R+   + + I+ SCR +
Sbjct: 4526 EKCGPKCSTHEKEIISGMQRHGMVMSVHAKLF-SQADTNQIGRNEKSNSLKIDNSCRSN 4583


>UniRef50_UPI000155C996 Cluster: PREDICTED: similar to growth
           inhibition and differentiation related protein 86; n=2;
           Tetrapoda|Rep: PREDICTED: similar to growth inhibition
           and differentiation related protein 86 - Ornithorhynchus
           anatinus
          Length = 835

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 503 CGPRGSAREKACIHGKREQNGLNCKYADVFIAGPET--NERARDGLPSVMGINRSC 664
           C PR +  E     GK+E NGLN K  D+    P++  +ERAR   P V     SC
Sbjct: 170 CDPREAPSESFWPPGKQELNGLNPKDRDLSSIRPDSKLSERARGTQPPVEPGGFSC 225


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,646,106
Number of Sequences: 1657284
Number of extensions: 13841488
Number of successful extensions: 30268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30262
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)