Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0007.Seq
         (757 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    45   0.002
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    43   0.009
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    38   0.20 
UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    38   0.27 
UniRef50_A3CG99 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    35   2.5  
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   5.8  

>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = +2

Query: 644 LLASLDVVAVSQAPSPESNPDSP 712
           LL SLDVVAVSQAPSPE NPDSP
Sbjct: 167 LLPSLDVVAVSQAPSPELNPDSP 189


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 72  GKCFR*CSSCDDPRISPLTSPYECPQ 149
           GKCFR C S ++ RISPLTS Y+CPQ
Sbjct: 259 GKCFRSCLSPENLRISPLTSEYKCPQ 284



 Score = 38.3 bits (85), Expect = 0.20
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 665 VAVSQAPSPESNPDSPLPVTTMV 733
           +A+SQAPSPESN +SPLPV  M+
Sbjct: 372 LAISQAPSPESNSNSPLPVKAML 394


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 38.3 bits (85), Expect = 0.20
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +2

Query: 611 PPRAGSG*FARLLASLDVVAVSQAPSP 691
           PP+  SG  +RLL  +D+VA+SQAPSP
Sbjct: 46  PPKVSSGKVSRLLLPVDIVAISQAPSP 72


>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 37.9 bits (84), Expect = 0.27
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -2

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          F   RTKVRGSK IRYRPSSN
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSN 26


>UniRef50_A3CG99 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 220

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 563 PITRLVRVPNRYFSSLPPRAGSG*FARLLASLDVVAVSQAPSPESNP--DSPLPVTTMVV 736
           P ++L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 737 AELPSK 754
            EL  +
Sbjct: 146 IELDDR 151


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +1

Query: 577 RKSPESLFFVTTSPCREW 630
           RKSP  LFFVTTSP REW
Sbjct: 25  RKSPVLLFFVTTSPGREW 42


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -2

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          FH  RTKV GSK IRY PS N
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLN 26


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,418,839
Number of Sequences: 1657284
Number of extensions: 14803234
Number of successful extensions: 41807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41788
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)