Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B600F Cluster: PREDICTED: similar to sigma DNA ...    40   0.016
UniRef50_Q9W3D9 Cluster: CG11265-PA, isoform A; n=5; Eumetazoa|R...    39   0.021
UniRef50_UPI0000D5677A Cluster: PREDICTED: similar to CG11265-PA...    38   0.063
UniRef50_Q7PUP3 Cluster: ENSANGP00000017407; n=4; Endopterygota|...    37   0.083
UniRef50_A6C7R5 Cluster: Probable membrane protein; n=1; Plancto...    36   0.15 
UniRef50_Q8NDF8 Cluster: PAP-associated domain-containing protei...    34   0.77 
UniRef50_Q5XG87 Cluster: DNA polymerase sigma; n=33; Euteleostom...    33   1.4  
UniRef50_UPI0000E474E1 Cluster: PREDICTED: similar to VCRP9432; ...    32   3.1  
UniRef50_A3YCH8 Cluster: Lipid A biosynthesis acyltransferase; n...    32   3.1  
UniRef50_Q69N89 Cluster: Putative uncharacterized protein OSJNBa...    31   5.5  
UniRef50_Q3AQW3 Cluster: Putative uncharacterized protein; n=1; ...    31   7.2  
UniRef50_Q11H66 Cluster: FAD dependent oxidoreductase; n=2; Rhiz...    31   7.2  
UniRef50_A2F571 Cluster: Putative uncharacterized protein; n=1; ...    31   7.2  
UniRef50_A1KBK5 Cluster: Putative uncharacterized protein; n=1; ...    30   9.5  
UniRef50_A0C3W8 Cluster: Chromosome undetermined scaffold_148, w...    30   9.5  

>UniRef50_UPI00015B600F Cluster: PREDICTED: similar to sigma DNA
           polymerase, putative; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to sigma DNA polymerase, putative -
           Nasonia vitripennis
          Length = 509

 Score = 39.5 bits (88), Expect = 0.016
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHFK 100
           +VDISFNM++GVKSAELIK FK
Sbjct: 156 KVDISFNMNNGVKSAELIKTFK 177


>UniRef50_Q9W3D9 Cluster: CG11265-PA, isoform A; n=5; Eumetazoa|Rep:
           CG11265-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 1029

 Score = 39.1 bits (87), Expect = 0.021
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHFK 100
           +VDISFNM SGV+SAELIK FK
Sbjct: 381 KVDISFNMQSGVQSAELIKKFK 402


>UniRef50_UPI0000D5677A Cluster: PREDICTED: similar to CG11265-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG11265-PA, isoform A - Tribolium castaneum
          Length = 513

 Score = 37.5 bits (83), Expect = 0.063
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNMS+GVKSAELIK +
Sbjct: 221 KVDISFNMSNGVKSAELIKTY 241


>UniRef50_Q7PUP3 Cluster: ENSANGP00000017407; n=4;
           Endopterygota|Rep: ENSANGP00000017407 - Anopheles
           gambiae str. PEST
          Length = 1039

 Score = 37.1 bits (82), Expect = 0.083
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHFK 100
           +VDISFNM SGV+SA+LIK FK
Sbjct: 381 KVDISFNMESGVQSAKLIKGFK 402


>UniRef50_A6C7R5 Cluster: Probable membrane protein; n=1;
           Planctomyces maris DSM 8797|Rep: Probable membrane
           protein - Planctomyces maris DSM 8797
          Length = 428

 Score = 36.3 bits (80), Expect = 0.15
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 289 YASGSGHRSSVFLKVNLELSISIIKYSVCVRTVVNNELFRCAGGHIFQH 143
           Y +G+       +++   +  S++K   CV  +V N+LFRC G    Q+
Sbjct: 281 YQNGNSESLEAVIRITASICDSLLKQHACVECLVENQLFRCEGNQRDQY 329


>UniRef50_Q8NDF8 Cluster: PAP-associated domain-containing protein
           5; n=22; Euteleostomi|Rep: PAP-associated
           domain-containing protein 5 - Homo sapiens (Human)
          Length = 572

 Score = 33.9 bits (74), Expect = 0.77
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
           S+   +VDISFN+ +GV++A+LIK F
Sbjct: 225 SFTEVKVDISFNVQNGVRAADLIKDF 250


>UniRef50_Q5XG87 Cluster: DNA polymerase sigma; n=33;
           Euteleostomi|Rep: DNA polymerase sigma - Homo sapiens
           (Human)
          Length = 542

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>UniRef50_UPI0000E474E1 Cluster: PREDICTED: similar to VCRP9432;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to VCRP9432 - Strongylocentrotus purpuratus
          Length = 845

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 79  VTSPRAHLEMFDKFGALHAAAHVERYVHLRSEITH 183
           +TS R  L M D F  L+ +A +E+Y HL  EI H
Sbjct: 551 MTSRREQLSM-DSFRPLYPSADIEKYSHLLQEIEH 584


>UniRef50_A3YCH8 Cluster: Lipid A biosynthesis acyltransferase; n=1;
           Marinomonas sp. MED121|Rep: Lipid A biosynthesis
           acyltransferase - Marinomonas sp. MED121
          Length = 297

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 192 WSIMSYFAAQVDISFNMSSGVKSAELIKHFKVSAR*RHATPLVPCN 55
           W +M+Y+ AQ      M   VK+AE +  F   AR R  + LVP N
Sbjct: 125 WEMMNYYLAQFKPLTAMYRPVKNAEKLDAFIRDARERAGSQLVPTN 170


>UniRef50_Q69N89 Cluster: Putative uncharacterized protein
           OSJNBa0019B22.16; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0019B22.16 - Oryza sativa subsp. japonica (Rice)
          Length = 60

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 14  IDSGTALRVQLKCKLHGTRGVA*RHRALTLKCLISSALFTPLLMLKDM 157
           + + T LR++L+C+LH    VA    A T      ++ FTP L +K +
Sbjct: 5   VRAATRLRLRLRCRLHERVAVARATSASTASASARASSFTPALGVKSV 52


>UniRef50_Q3AQW3 Cluster: Putative uncharacterized protein; n=1;
           Chlorobium chlorochromatii CaD3|Rep: Putative
           uncharacterized protein - Chlorobium chlorochromatii
           (strain CaD3)
          Length = 167

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 241 LELSISIIKYSVCVRTVVNNE---LFRCAGGHIFQ 146
           L+ S+S I YS+ +R + NNE   LF  AGGH  +
Sbjct: 62  LKASVSGIDYSILIRPISNNEWNGLFIKAGGHYLE 96


>UniRef50_Q11H66 Cluster: FAD dependent oxidoreductase; n=2;
           Rhizobiales|Rep: FAD dependent oxidoreductase -
           Mesorhizobium sp. (strain BNC1)
          Length = 434

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = -2

Query: 216 STACAYVLWSIMSYFAAQVDISFNMSSGVKSAELIKHFKVSAR*RHATPLVPCNLHFN 43
           S  C Y+  S  S+  AQ DI      GV+  EL+    V  R  H  PL    L FN
Sbjct: 158 SDGCLYLYRSERSFQRAQRDIELRRREGVR-MELLDRKAVKEREPHLAPLYSNGLLFN 214


>UniRef50_A2F571 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 628

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 165 AQRNNSLLTTVRTHTLYL--IIEMDNSRFTFKNTEDLCPDPEAYIQYIHVIKLLCKFHLN 338
           +++NN L+  ++ H+L++  ++E  N  F   +TE    D E +   I  +  L   H+N
Sbjct: 413 SKQNNQLVQLMKCHSLFILQVLENQNPEFDLNSTEVSFIDSEEHNNKIKELIKLADHHIN 472


>UniRef50_A1KBK5 Cluster: Putative uncharacterized protein; n=1;
           Azoarcus sp. BH72|Rep: Putative uncharacterized protein
           - Azoarcus sp. (strain BH72)
          Length = 831

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 184 NELFRCAGG-HIFQHXXXXXXXRTYQTFQGERAVTSRDSSSPMQLAL*LDPECGST 20
           + + RCA G H           +   +FQGE A+ SRD+    +  L L PE   T
Sbjct: 656 DNIARCANGLHQLARGGRFDIEQLETSFQGEYAIVSRDAQGSREALLRLMPELSDT 711


>UniRef50_A0C3W8 Cluster: Chromosome undetermined scaffold_148,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_148,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 255

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 150 KICPPAQRNNSLLTTVRTHTLYLIIEMDNSRFTFKN 257
           K C P ++NN L+     HT+YL+++  N  ++F N
Sbjct: 121 KHCDPNEKNNKLIQYNSLHTVYLLVK-QNGIWSFPN 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,269,115
Number of Sequences: 1657284
Number of extensions: 6156630
Number of successful extensions: 11819
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11818
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)