Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BQ13 Cluster: Two-component hybrid sensor and regulat...    36   0.41 
UniRef50_O96157 Cluster: Putative uncharacterized protein PFB028...    34   1.2  
UniRef50_A7RZM3 Cluster: Predicted protein; n=2; Nematostella ve...    34   1.2  
UniRef50_Q3Y2E7 Cluster: Major facilitator superfamily; n=3; Lac...    33   1.6  
UniRef50_Q9XUK8 Cluster: Putative uncharacterized protein; n=2; ...    33   2.9  
UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n...    32   3.8  
UniRef50_Q3A6U1 Cluster: ABC-type phosphate transport system, pe...    32   5.0  
UniRef50_A4W170 Cluster: Possible two-component sensor histidine...    31   6.6  
UniRef50_A0DEZ8 Cluster: Chromosome undetermined scaffold_48, wh...    31   6.6  

>UniRef50_A7BQ13 Cluster: Two-component hybrid sensor and regulator;
           n=1; Beggiatoa sp. PS|Rep: Two-component hybrid sensor
           and regulator - Beggiatoa sp. PS
          Length = 934

 Score = 35.5 bits (78), Expect = 0.41
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 213 RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSI--YCQRFNLTNGWF*E 46
           RN+L F+T   +++FI+ L++   YLRND  F LF+S F       Q  N    WF E
Sbjct: 351 RNTL-FITSAILIIFILFLNLFYRYLRND--FSLFISFFNQAANLDQEINRKALWFHE 405


>UniRef50_O96157 Cluster: Putative uncharacterized protein PFB0280w;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFB0280w - Plasmodium falciparum (isolate 3D7)
          Length = 2539

 Score = 33.9 bits (74), Expect = 1.2
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +1

Query: 7   RETTFIDNFLLHSLLKPAVC*VKTLTINRXKQ**KQNKSNIVTQVNCNHRQ*YYEYNNSK 186
           ++   + N +L+ L+ P  C   T+ +N+     ++NK++I T+ N N+       NN+K
Sbjct: 709 KKECLLKNSILNKLIIPHDCKKGTMILNQNIHLNEENKNDITTKNNNNNNNNNNNNNNNK 768

Query: 187 IGNE 198
           + N+
Sbjct: 769 VNNQ 772


>UniRef50_A7RZM3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 296

 Score = 33.9 bits (74), Expect = 1.2
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = -2

Query: 342 FLFIYLISFVRNLRS*VLIVYFPLCPRTNKSMVYFLIIANYS*RNSLVFVTDLAVVVFII 163
           ++ I+LI F+ N      I  + +C +T   MV  L+IAN +       + DL V VF +
Sbjct: 5   YVVIFLIGFLGNA-----IGIYVVCRQTGFRMVTNLLIANMA-------IADLLVCVFSM 52

Query: 162 LLSVVTIYLRN---DVTFVLFL 106
             SVV +Y+RN     TF +FL
Sbjct: 53  PASVVHLYIRNKWLPGTFGIFL 74


>UniRef50_Q3Y2E7 Cluster: Major facilitator superfamily; n=3;
           Lactobacillales|Rep: Major facilitator superfamily -
           Enterococcus faecium DO
          Length = 428

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -2

Query: 213 RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYCQRFNL 67
           + +L+ VTD+ V +F ++L+VV     +   +++F+SLF     Q F +
Sbjct: 78  KKALLIVTDIIVAIFALILAVVGTISESFPIWLVFVSLFMRSVAQTFQM 126


>UniRef50_Q9XUK8 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 362

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -2

Query: 252 SMVYFLIIANYS*RNSLVFVT-DLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYCQR 76
           ++V  ++  N S RN+L  V  +LA+   +ILL  + + + NDVT   +   F +++C+ 
Sbjct: 65  TLVVVVVATNKSMRNALNLVLMNLAIADLLILLFCLPLTVVNDVTKTFW---FSAVFCKS 121

Query: 75  FNLTN 61
            N  N
Sbjct: 122 VNFVN 126


>UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC2038 UniRef100 entry -
           Rattus norvegicus
          Length = 184

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 196 RYRSCCCCIHNIIVCGYNLLA*RCYFCFV 110
           R R CCCC  N++ C    L+ +C+ C +
Sbjct: 12  RRRRCCCCRCNVLFCFPYCLSFQCFKCLI 40


>UniRef50_Q3A6U1 Cluster: ABC-type phosphate transport system,
           permease component; n=3; Bacteria|Rep: ABC-type
           phosphate transport system, permease component -
           Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
          Length = 532

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -2

Query: 204 LVFVTDLAVVVFIILLSVVTIYLRN 130
           +VFVT L +V+ ++++S V IYLRN
Sbjct: 497 MVFVTTLLLVLIVLVMSSVAIYLRN 521


>UniRef50_A4W170 Cluster: Possible two-component sensor histidine
           kinase; n=2; Streptococcus suis|Rep: Possible
           two-component sensor histidine kinase - Streptococcus
           suis (strain 98HAH33)
          Length = 502

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -2

Query: 207 SLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYCQRFNLTNG 58
           +L+F+  L +V+FI++L   ++ +   +T +L+   F  +  + + L  G
Sbjct: 235 TLIFLILLYIVLFILILKRTSLVVLETITIILYFQYFFQLVGESYRLITG 284


>UniRef50_A0DEZ8 Cluster: Chromosome undetermined scaffold_48, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_48,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 261

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 249 MVYFLIIANYS*RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLF 97
           +V  L I N S  +  + V  L+ ++ IILL    I+++  V F+LF+ LF
Sbjct: 65  VVIDLQIMNLSTFHIQIVVIHLSFLLIIILLLYTIIFIKCSVIFILFIQLF 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,628,570
Number of Sequences: 1657284
Number of extensions: 5269804
Number of successful extensions: 10565
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10558
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)