Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0004.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    41   0.010
UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep: ...    32   4.8  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 40.7 bits (91), Expect = 0.010
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 302  VNRLLHKPGQGKICLC 255
            VNRLLHKPGQGKICLC
Sbjct: 1154 VNRLLHKPGQGKICLC 1169



 Score = 39.1 bits (87), Expect = 0.031
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -1

Query: 252  ENIFDIPYHLRKNIGV 205
            ENIFDIPYHLRKNIGV
Sbjct: 1171 ENIFDIPYHLRKNIGV 1186


>UniRef50_Q99GT5 Cluster: ORF131; n=3; Nucleopolyhedrovirus|Rep:
           ORF131 - Helicoverpa zea SNPV
          Length = 192

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 160 LKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEQ 258
           L H +  +K  +V LN D + E V+NI++VFE+
Sbjct: 149 LNHLRSINKQKIVFLNGDHVEEYVQNIKHVFER 181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,677,898
Number of Sequences: 1657284
Number of extensions: 6517373
Number of successful extensions: 11476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11475
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)