Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0046
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P16495 Cluster: Nucleocapsid protein; n=23; Orthobunyav...    34   3.7  
UniRef50_Q9KA13 Cluster: BH2481 protein; n=1; Bacillus haloduran...    33   6.5  
UniRef50_Q4FNH4 Cluster: Phenylalanyl-tRNA synthetase beta chain...    33   8.6  

>UniRef50_P16495 Cluster: Nucleocapsid protein; n=23;
           Orthobunyavirus|Rep: Nucleocapsid protein - Bunyamwera
           virus
          Length = 233

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 223 INSCVRLPEPSRF---PQIFSSEAHAIGLEWDNAVELKCRLYLSAVSGAEHFLKIFGVYP 393
           +   +++ EP +     +I +  A   G+ W++  E+    YLS   G+E FL  F  YP
Sbjct: 104 LEKMLKVSEPEKLIIKSKIINPLAEKNGITWNDGEEV----YLSFFPGSEMFLGTFRFYP 159

Query: 394 LVCALKKYQMKKL 432
           L   + K Q K++
Sbjct: 160 LAIGIYKVQRKEM 172


>UniRef50_Q9KA13 Cluster: BH2481 protein; n=1; Bacillus
           halodurans|Rep: BH2481 protein - Bacillus halodurans
          Length = 138

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = +1

Query: 403 ALKKYQMKKLPLELVIKAGKIKN----EKGERWRRFCRE 507
           A K++QM+KLPL   +KAG +++    ++G+RW +   E
Sbjct: 79  AFKRHQMEKLPLGSELKAGTVESICEVQEGDRWEQLMTE 117


>UniRef50_Q4FNH4 Cluster: Phenylalanyl-tRNA synthetase beta chain;
           n=2; Candidatus Pelagibacter ubique|Rep:
           Phenylalanyl-tRNA synthetase beta chain - Pelagibacter
           ubique
          Length = 802

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +2

Query: 8   YKYADFLKEKENVAIILAKAYDLRQRLKEVKPG-----QCIKVQDMYIIPELPLMIKKTG 172
           YKY+DF K + + A +L K + +++ ++ +        + +KV D+Y    +P   K   
Sbjct: 705 YKYSDFQKSERDFAFVLDKNFKVQELIETISNVDKELIKSVKVFDVYEGANIPEGKKSIA 764

Query: 173 PNVALKPSDFTI 208
            NV ++P + T+
Sbjct: 765 LNVIIQPLEKTL 776


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,920,289
Number of Sequences: 1657284
Number of extensions: 17878215
Number of successful extensions: 41841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41835
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)