Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0030
         (456 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.14 
UniRef50_Q010N1 Cluster: Molecular chaperone; n=2; Ostreococcus|...    36   0.55 
UniRef50_A6TNB4 Cluster: Cell wall hydrolase/autolysin precursor...    35   0.95 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   1.3  
UniRef50_Q21D45 Cluster: Inner-membrane translocator; n=1; Rhodo...    32   6.7  
UniRef50_Q0LW08 Cluster: Methyltransferase FkbM; n=1; Caulobacte...    32   6.7  
UniRef50_A4J4I7 Cluster: NAD+ synthetase; n=3; Clostridiales|Rep...    32   6.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.14
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 406 DELTAHLVLSGYWSP 362
           DELTAHLVLSGYWSP
Sbjct: 161 DELTAHLVLSGYWSP 175


>UniRef50_Q010N1 Cluster: Molecular chaperone; n=2;
           Ostreococcus|Rep: Molecular chaperone - Ostreococcus
           tauri
          Length = 906

 Score = 35.5 bits (78), Expect = 0.55
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 169 IIICVITGGRTSWESARVGTTTPRLFP 249
           +++ V+  G TSWE+ R+GTT  R +P
Sbjct: 33  VVVVVVVRGATSWETLRIGTTASRAWP 59


>UniRef50_A6TNB4 Cluster: Cell wall hydrolase/autolysin precursor;
           n=1; Alkaliphilus metalliredigens QYMF|Rep: Cell wall
           hydrolase/autolysin precursor - Alkaliphilus
           metalliredigens QYMF
          Length = 419

 Score = 34.7 bits (76), Expect = 0.95
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = -1

Query: 240 AGGGGTYPCGLPRSPTTSDYANYNFAGLIXITRCYSFTVEVNREHLLSTYFIRKIGTRLR 61
           +G GG  P G      T  Y N  FA L+  T+  +  ++V+R  +   Y+  K  T L 
Sbjct: 7   SGHGGKDP-GAVAFGMTEKYLNLIFAELLA-TQLENLNIDVDRSLINDIYYTPKELTDLI 64

Query: 60  DSNTGASICIQMHRKSY 10
             ++GASICI  H  ++
Sbjct: 65  -KDSGASICISCHNNAF 80


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 1.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 232 WWYLPVRTPKKSYHQ 188
           WWYLP RT K+SYH+
Sbjct: 571 WWYLPARTHKRSYHR 585


>UniRef50_Q21D45 Cluster: Inner-membrane translocator; n=1;
           Rhodopseudomonas palustris BisB18|Rep: Inner-membrane
           translocator - Rhodopseudomonas palustris (strain
           BisB18)
          Length = 327

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = -1

Query: 291 GYPTLRTETH*CSQRK*AGGGGTYPCGLPRSPTTSDYANYNFAGLIXITRCYSFTVEVNR 112
           GYPTLR   H  +    A G  TY   +  +  T  Y  Y  AG+  +    SFTVE  R
Sbjct: 112 GYPTLRLRGHYLAMATFALGLITYDITVQWTSLTQGYMGY--AGIPPL-GVGSFTVEDER 168

Query: 111 EHL----LSTYFIRKIGTRLRDSNTGASI 37
             L    L   F   I  RLRDS  G  +
Sbjct: 169 MKLICLGLLLLFAFWISQRLRDSRFGRGL 197


>UniRef50_Q0LW08 Cluster: Methyltransferase FkbM; n=1; Caulobacter
           sp. K31|Rep: Methyltransferase FkbM - Caulobacter sp.
           K31
          Length = 316

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 433 YFYFIA*MDDELTAHLVLSGYW 368
           Y  F+   DD+L+AHL+L GYW
Sbjct: 84  YKMFVDTRDDDLSAHLLLDGYW 105


>UniRef50_A4J4I7 Cluster: NAD+ synthetase; n=3; Clostridiales|Rep:
           NAD+ synthetase - Desulfotomaculum reducens MI-1
          Length = 635

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 189 WW*DFLGVRTGRYHHPPPISAVSTNAFRFE 278
           WW  F G+   +    PPI AVS  AF F+
Sbjct: 583 WWKQFTGIGVAKRIQAPPILAVSRRAFGFD 612


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,564,565
Number of Sequences: 1657284
Number of extensions: 9930461
Number of successful extensions: 20989
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20986
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)