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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30034
         (606 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    46   7e-04
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    41   0.020
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    40   0.046
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t...    40   0.046
UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whol...    38   0.14 
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    37   0.32 
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    36   0.98 
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    36   0.98 
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    34   2.3  
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    34   3.0  
UniRef50_A1TQM0 Cluster: Helicase domain protein; n=3; Comamonad...    33   5.2  
UniRef50_A2FU24 Cluster: F5/8 type C domain containing protein; ...    33   6.9  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNMEGFR-GRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKEK 419
           HV RR+ +   +R   M +EG R GRGR KK W + ++ D+    ++E+M  DR  W+ +
Sbjct: 627 HVKRRSADAPVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSR 686


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 41.1 bits (92), Expect = 0.020
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 595  HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGV 431
            H+ R N        L  N+ G R RGR  K+W DC+K D   R V     +  +  DR V
Sbjct: 865  HINRMNSKRYPHILLNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTEDRKV 924

Query: 430  WK 425
            W+
Sbjct: 925  WQ 926


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 39.9 bits (89), Expect = 0.046
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKEK 419
           HV RR  + + +R   M   +  RGRGR KK   + +K D+   G+   MV DR +W++ 
Sbjct: 311 HVERRPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKL 370

Query: 418 ACCIDP 401
               DP
Sbjct: 371 IHVADP 376


>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
           taurus|Rep: Reverse transcriptase-like - Bos taurus
           (Bovine)
          Length = 335

 Score = 39.9 bits (89), Expect = 0.046
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDM-CKRGVSEEMVYDRGVWKEK 419
           H+MRR D+ L K  +   +EG R RGR + +W+D +   M    G   E+V DR  W   
Sbjct: 264 HLMRRADS-LEKTLMLGKIEGRRRRGRQRMRWLDGIINSMDMGLGGLRELVMDRETWCAV 322

Query: 418 AC 413
            C
Sbjct: 323 VC 324


>UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14527,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 52

 Score = 38.3 bits (85), Expect = 0.14
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 589 MRRNDNEL-GKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEE 452
           M R + E  G+R L + + G R RGR K+++MD VK DM   G  EE
Sbjct: 1   MSRGEMEKDGRRMLRLELPGRRPRGRTKRRFMDVVKEDMKVVGAREE 47


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 37.1 bits (82), Expect = 0.32
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -3

Query: 595  HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGV 431
            HV+R       K A+   + G R RGR  K+W+DC+  D   R +     +  +  DR  
Sbjct: 952  HVLRMKPTRYPKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKT 1011

Query: 430  W 428
            W
Sbjct: 1012 W 1012


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 35.5 bits (78), Expect = 0.98
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 553 LTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGVWK 425
           L  N+ G   RGR  K+W DC+K D   R V     +  +  DR VW+
Sbjct: 18  LNENVHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 35.5 bits (78), Expect = 0.98
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALT--MNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKE 422
           H+ RRNDN     A+T     EG R RGR +K+W D ++    +    ++ + +RG+W  
Sbjct: 367 HISRRNDNRWSS-AITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQAL-NRGIWNH 424

Query: 421 KA 416
            A
Sbjct: 425 HA 426


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVK 485
           H++R + + L  + +   +EG R RGR +K+W D +K
Sbjct: 337 HILRGSGSPLAAQIIESQVEGKRKRGRQRKQWFDNIK 373


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDM-CKRGVSEEMVYDRGVW 428
           HV+R   + L  +A   +  G R RGR  K+W D V+ D+      +E+   DR  W
Sbjct: 452 HVLRMPHHRLPYQAFQNDFNGRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQDRSDW 508


>UniRef50_A1TQM0 Cluster: Helicase domain protein; n=3;
           Comamonadaceae|Rep: Helicase domain protein - Acidovorax
           avenae subsp. citrulli (strain AAC00-1)
          Length = 709

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = -3

Query: 601 MEHVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKE 422
           M  ++R   + LG+  L    +GF G    + K  D +KG M +R  S+ ++ D G    
Sbjct: 435 MHTLLRITGHALGQLPLGDFRKGFAGTAEKRAKLADAIKGWMIRR--SKAVLSDLGKKDR 492

Query: 421 KACCIDPR*LGEGQENYED 365
           +   + P  LG  +E Y D
Sbjct: 493 QLRYLSPEGLGTYREIYRD 511


>UniRef50_A2FU24 Cluster: F5/8 type C domain containing protein;
           n=2; Trichomonas vaginalis G3|Rep: F5/8 type C domain
           containing protein - Trichomonas vaginalis G3
          Length = 2104

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -3

Query: 388 EGQENYEDDVKSYTYFVNTSIGDWTTTNKFHHKIFNPTSQYNK 260
           E  + Y+  V   TY  NT  G WT  NKF HK F+P S Y++
Sbjct: 305 EKYQVYDPSVSGTTY--NTE-GFWTFNNKFPHK-FSPPSDYSR 343


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,992,957
Number of Sequences: 1657284
Number of extensions: 11335988
Number of successful extensions: 23619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23617
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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