Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D72395 Cluster: hypothetical protein CdifQ_04000...    31   4.9  
UniRef50_UPI00006CB90B Cluster: hypothetical protein TTHERM_0072...    31   4.9  
UniRef50_UPI000049978D Cluster: Rho guanine nucleotide exchange ...    31   4.9  
UniRef50_UPI00006CA711 Cluster: hypothetical protein TTHERM_0084...    30   8.6  
UniRef50_Q89YV2 Cluster: Putative uncharacterized protein; n=3; ...    30   8.6  
UniRef50_Q7SB58 Cluster: Predicted protein; n=1; Neurospora cras...    30   8.6  

>UniRef50_UPI0000D72395 Cluster: hypothetical protein
           CdifQ_04000277; n=1; Clostridium difficile
           QCD-32g58|Rep: hypothetical protein CdifQ_04000277 -
           Clostridium difficile QCD-32g58
          Length = 362

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 185 VLSKIVNSCY*IWHLFVLYLTLLQNSLHYM 274
           +L KI N+C  +WHLFVL +      + Y+
Sbjct: 268 ILPKIENNCTHVWHLFVLQVEKRDTFMEYL 297


>UniRef50_UPI00006CB90B Cluster: hypothetical protein
           TTHERM_00729220; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00729220 - Tetrahymena
           thermophila SB210
          Length = 194

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 120 IFKSIIDNSKNGVTQNRIISKGNNN 46
           I KSIID SK     N+ ISKG +N
Sbjct: 23  IIKSIIDKSKKQTKSNKFISKGKDN 47


>UniRef50_UPI000049978D Cluster: Rho guanine nucleotide exchange
           factor; n=1; Entamoeba histolytica HM-1:IMSS|Rep: Rho
           guanine nucleotide exchange factor - Entamoeba
           histolytica HM-1:IMSS
          Length = 876

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 287 YKMFTYNAKSSVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDLRSMM 144
           YK+F  N+ +S+  L + +K +KF N     L + +  DNQ DLRS +
Sbjct: 215 YKLFLGNSDTSLQFLVELEKSSKF-NDILDLLRSHLPGDNQLDLRSYL 261


>UniRef50_UPI00006CA711 Cluster: hypothetical protein
           TTHERM_00841330; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00841330 - Tetrahymena
           thermophila SB210
          Length = 918

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 263 KSSVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDLRSMMK 141
           +  V  L + +   +F+N+Y+QF  +L Y  NQ DL+   K
Sbjct: 831 QQQVYKLQEKENQPQFANNYNQFANSLGYDQNQIDLKQERK 871


>UniRef50_Q89YV2 Cluster: Putative uncharacterized protein; n=3;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides thetaiotaomicron
          Length = 234

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 82  YAILRVVNYTFKYQ*HTNTSFIMLLKSVWLSRYIS-AIKNCE*LLLNLASFCALFNVATE 258
           +A L  VN+  +Y+     + IMLL  + +S Y++  I+N      N      +F++A  
Sbjct: 21  FASLPQVNHKTRYRVLYAIAIIMLLAVIPISEYMAGGIQNSS----NNYLLVLIFDIAVG 76

Query: 259 LFALYVNIL*QIHYNFLKKKKK 324
            F +Y+  L  + +N LK+K +
Sbjct: 77  YFCMYIAAL--LKFNVLKRKNQ 96


>UniRef50_Q7SB58 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 522

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 293 ICYKMFTYNAKSSVATLNKAQKDAKFSNSYSQFL 192
           +CYK F+    S+     K Q  A F N+ S+FL
Sbjct: 197 VCYKNFSATLSSATTPQKKRQASAAFENASSRFL 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,779,027
Number of Sequences: 1657284
Number of extensions: 4642868
Number of successful extensions: 10641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10639
length of database: 575,637,011
effective HSP length: 85
effective length of database: 434,767,871
effective search space used: 9999661033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)