SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;...   105   2e-22
UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation...    50   1e-05
UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella ve...    41   0.008
UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex sub...    38   0.043
UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|R...    38   0.043
UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n...    38   0.057
UniRef50_Q4W0V9 Cluster: Elongator component; n=5; Magnoliophyta...    38   0.075
UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa acumi...    37   0.13 
UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3; ...    37   0.13 
UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis t...    36   0.17 
UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma j...    36   0.23 
UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11; Eut...    36   0.23 
UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28; Eute...    36   0.23 
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc...    36   0.30 
UniRef50_O27166 Cluster: Conserved protein; n=1; Methanothermoba...    36   0.30 
UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:...    35   0.40 
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh...    35   0.40 
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco...    35   0.40 
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ...    35   0.53 
UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation...    34   0.70 
UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 - B...    34   0.70 
UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in s...    34   0.92 
UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79; Proteoba...    33   1.2  
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;...    33   1.2  
UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage Ma-LM...    33   1.6  
UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9; Clostridi...    33   2.1  
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac...    33   2.1  
UniRef50_A0NLA6 Cluster: DNA repair protein RadA; n=3; Bacteria|...    33   2.1  
UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1; ...    32   2.8  
UniRef50_UPI000065D4F5 Cluster: Homolog of Danio rerio "Novel he...    32   3.7  
UniRef50_Q3W477 Cluster: Binding-protein-dependent transport sys...    32   3.7  
UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein k...    32   3.7  
UniRef50_Q2HCX7 Cluster: Putative uncharacterized protein; n=1; ...    32   3.7  
UniRef50_Q6KYY8 Cluster: NADH dehydrogenase; n=2; Thermoplasmata...    32   3.7  
UniRef50_Q6W4X8 Cluster: Putative primase/helicase; n=2; Strepto...    31   4.9  
UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1; Syntropho...    31   4.9  
UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog, putat...    31   4.9  
UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia stipitis...    31   4.9  
UniRef50_Q9W213 Cluster: CG13521-PB, isoform B; n=5; Sophophora|...    31   6.5  
UniRef50_Q54IX8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  
UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5; Gammaprot...    31   8.6  
UniRef50_P74848 Cluster: Amino acid permease YeeF like protein; ...    31   8.6  
UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3; Cyanobact...    31   8.6  

>UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;
           Bombyx mori|Rep: Elongation protein 4-like protein -
           Bombyx mori (Silk moth)
          Length = 369

 Score =  105 bits (252), Expect = 2e-22
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV
Sbjct: 1   MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 49


>UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation
           protein 4 homolog; n=2; Apocrita|Rep: PREDICTED: similar
           to elongation protein 4 homolog - Apis mellifera
          Length = 364

 Score = 50.4 bits (115), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 32/38 (84%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           I+GTK  +KN+   VSSGIPSLD+I+GGG+P GS+F++
Sbjct: 14  ISGTKPSLKNSQLLVSSGIPSLDYIIGGGLPIGSLFLI 51


>UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 275

 Score = 40.7 bits (91), Expect = 0.008
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           I GT+  + NN   VS+GIPSLD ++GGGI  G++ +V
Sbjct: 17  IPGTRPSIHNNQLLVSTGIPSLDSVIGGGIAVGTVLLV 54


>UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex
           subunit; n=1; Dictyostelium discoideum AX4|Rep: RNA
           polymerase II elongator complex subunit - Dictyostelium
           discoideum AX4
          Length = 439

 Score = 38.3 bits (85), Expect = 0.043
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +1

Query: 103 NGTKV--KNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           NG K+  KN+    S+G+  LD I+GGGIP GSI ++
Sbjct: 48  NGCKISIKNSNLLTSTGLTDLDDIIGGGIPIGSILMI 84


>UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|Rep:
           Pax neighbour protein - Aedes aegypti (Yellowfever
           mosquito)
          Length = 370

 Score = 38.3 bits (85), Expect = 0.043
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTKVK--NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           I GT+    +    +SSG PSLDH+ GGG P GSI  +
Sbjct: 13  IKGTRASLHSGQAILSSGNPSLDHVFGGGFPIGSIIAI 50


>UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n=2;
           Sophophora|Rep: Putative elongator complex protein 4 -
           Drosophila melanogaster (Fruit fly)
          Length = 437

 Score = 37.9 bits (84), Expect = 0.057
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 61  MRSFRKFIDISTHINGTKVKNNLPYV--SSGIPSLDHIVGGGIPAGSIFVV 207
           M SFRK   +   I GT+   +   V  SSG P LD ++GGG+P GSI ++
Sbjct: 1   MTSFRKRT-VQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI 50


>UniRef50_Q4W0V9 Cluster: Elongator component; n=5;
           Magnoliophyta|Rep: Elongator component - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 355

 Score = 37.5 bits (83), Expect = 0.075
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 67  SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           SF + I +  S  I G K   N   ++SSGI  LD I+GGG P GS+ +V
Sbjct: 11  SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60


>UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa
           acuminata|Rep: Paxneb-related protein - Musa acuminata
           (Banana)
          Length = 291

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           N   +VSSGIP LD I+GGG   GS+ +V
Sbjct: 44  NGATFVSSGIPDLDRILGGGFLLGSLVMV 72


>UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3;
           Magnoliophyta|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 462

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           N   +VSSGIP LD I+GGG   GS+ ++
Sbjct: 37  NGAAFVSSGIPDLDRILGGGFLIGSVVMI 65


>UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis
           thaliana|Rep: AT3g11220/F11B9_116 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 243

 Score = 36.3 bits (80), Expect = 0.17
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           N   ++SSGI  LD I+GGG P GS+ +V
Sbjct: 32  NGTAFISSGIRDLDRILGGGYPLGSLVMV 60


>UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma
           japonicum|Rep: SJCHGC00647 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 340

 Score = 35.9 bits (79), Expect = 0.23
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTKVKNNLP--YVSSGIPSLDHIVGGGIPAGSIFVV 207
           +NG K    L    +S+GIPS D ++GGG+ +GSI +V
Sbjct: 1   MNGVKRSFKLSTFLISTGIPSFDELLGGGVASGSIILV 38


>UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11;
           Eutheria|Rep: Elongation protein 4 homolog - Homo
           sapiens (Human)
          Length = 531

 Score = 35.9 bits (79), Expect = 0.23
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           I GT+  V+N    VS+G+P+LD ++GGG+  G++ ++
Sbjct: 49  IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLI 86


>UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28;
           Euteleostomi|Rep: Elongator complex protein 4 - Homo
           sapiens (Human)
          Length = 424

 Score = 35.9 bits (79), Expect = 0.23
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = +1

Query: 100 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           I GT+  V+N    VS+G+P+LD ++GGG+  G++ ++
Sbjct: 49  IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLI 86


>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
           Deinococci|Rep: DNA repair protein radA - Deinococcus
           radiodurans
          Length = 503

 Score = 35.5 bits (78), Expect = 0.30
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
           P   SGIP LD ++GGG+ AG + ++G
Sbjct: 130 PRTPSGIPELDRVLGGGLVAGGVTLIG 156


>UniRef50_O27166 Cluster: Conserved protein; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           Conserved protein - Methanobacterium thermoautotrophicum
          Length = 470

 Score = 35.5 bits (78), Expect = 0.30
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAGSIFVVGS*ISFKIA*YLRAKTNLINKYGYE 282
           VS+GIP+LD ++GGG+  GS  +V              KT+L++K+ YE
Sbjct: 246 VSTGIPTLDEMLGGGVYRGSAVLVSGTTG-------AGKTSLLSKFAYE 287


>UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:
           RecA/RadA recombinase - Vibrio vulnificus
          Length = 227

 Score = 35.1 bits (77), Expect = 0.40
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 97  HINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVGS*ISF----KIA*YLRAKTNLI 264
           H N T+  N   Y +SGI  LD ++GGG P   +  + S +       +A YL+ + +LI
Sbjct: 16  HANSTRCANESCYQTSGIDELDKLLGGGFPQHGVVEMESALGIGELRLLANYLKQQQDLI 75


>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
           dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
           dehalogenans (strain 2CP-C)
          Length = 494

 Score = 35.1 bits (77), Expect = 0.40
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 127 LPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           L  VS+G+  LD ++GGGIPA SI VV
Sbjct: 10  LERVSTGVEGLDQVLGGGIPAKSITVV 36


>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
           Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
           superfamily - Pyrococcus kodakaraensis (Thermococcus
           kodakaraensis)
          Length = 237

 Score = 35.1 bits (77), Expect = 0.40
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 124 NLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           NL  + SG+P LD ++GGG   G ++VV
Sbjct: 9   NLDRIPSGVPGLDELIGGGFLPGRVYVV 36


>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
           Herminiimonas arsenicoxydans|Rep: Putative
           uncharacterized protein - Herminiimonas arsenicoxydans
          Length = 480

 Score = 34.7 bits (76), Expect = 0.53
 Identities = 14/26 (53%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAG-SIFVVG 210
           +S G+P+LD ++GGG+PAG S+ +VG
Sbjct: 251 LSMGVPALDEMMGGGLPAGYSLLLVG 276


>UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation
           protein 4 homolog; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to elongation protein 4 homolog -
           Tribolium castaneum
          Length = 1455

 Score = 34.3 bits (75), Expect = 0.70
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 139 SSGIPSLDHIVGGGIPAGSIFVV 207
           SSGI SLD I+GGG+P G++ ++
Sbjct: 34  SSGIHSLDSILGGGLPVGTVSII 56


>UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 -
           Burkholderia phytofirmans PsJN
          Length = 531

 Score = 34.3 bits (75), Expect = 0.70
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 73  RKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           R   D ST  N     ++   V +G+P LD I+GGG+  G ++++
Sbjct: 33  RTLNDSSTMTNHESQTSSRSNVETGVPGLDEILGGGLVRGGVYLL 77


>UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in
           signal transduction-like protein; n=1;
           Methanocorpusculum labreanum Z|Rep: RecA-superfamily
           ATPase implicated in signal transduction-like protein -
           Methanocorpusculum labreanum (strain ATCC 43576 / DSM
           4855 / Z)
          Length = 238

 Score = 33.9 bits (74), Expect = 0.92
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV 207
           + SGIP LD ++GGG   GS+FV+
Sbjct: 11  IPSGIPGLDDMIGGGFIKGSVFVL 34


>UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79;
           Proteobacteria|Rep: DNA repair protein radA -
           Bradyrhizobium sp. (strain ORS278)
          Length = 499

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
           P +SSG+  LD + GGG   GSI +VG
Sbjct: 70  PRLSSGMTELDRVTGGGFVRGSILLVG 96


>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein RAD57 - Candida albicans (Yeast)
          Length = 511

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 133 YVSSGIPSLDHIVGGGIPAGSI 198
           ++S+G+PS+D  +GGGIP G +
Sbjct: 84  FISTGLPSIDRELGGGIPIGEV 105


>UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage
           Ma-LMM01|Rep: RecA recombinase - Cyanophage Ma-LMM01
          Length = 354

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 133 YVSSGIPSLDHIVGGGIPAGSIFVVGS*ISFKIA*YLRAKTNLINKYGY 279
           ++ SGI SLD+++GGG P G I  +    S      ++   +L+   GY
Sbjct: 42  FIPSGIFSLDYVLGGGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAKGY 90


>UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9;
           Clostridiaceae|Rep: DNA repair protein radA -
           Clostridium tetani
          Length = 465

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV-GS*ISFKIA*YLRAKTNLINKYG 276
           +S+GI  L+ ++GGGI  GS+ ++ G     K    L+A  N+  KYG
Sbjct: 80  ISTGINELNRVLGGGIVRGSLTLISGDPGIGKSTLLLQAANNIAEKYG 127


>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
           Proteobacteria|Rep: DNA repair protein radA -
           Photobacterium profundum (Photobacterium sp. (strain
           SS9))
          Length = 459

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 109 TKVKN-NLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           ++V+N +LP  SSGI   D ++GGGI  GS+ ++
Sbjct: 65  SEVENKDLPRFSSGIGEFDRVLGGGIVPGSVLLL 98


>UniRef50_A0NLA6 Cluster: DNA repair protein RadA; n=3;
           Bacteria|Rep: DNA repair protein RadA - Oenococcus oeni
           ATCC BAA-1163
          Length = 470

 Score = 32.7 bits (71), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 121 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVG 210
           N LP   +G+  L+ ++GGGI  GS+ ++G
Sbjct: 68  NELPRTRTGLRELNRVLGGGIVPGSLILIG 97


>UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 711

 Score = 32.3 bits (70), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 133 YVSSGIPSLDHIVGGGIPAGSI 198
           ++S+G+P LD  +GGGIP G +
Sbjct: 200 HISTGLPDLDEQLGGGIPIGEV 221


>UniRef50_UPI000065D4F5 Cluster: Homolog of Danio rerio "Novel
           hemicentin protein; n=1; Takifugu rubripes|Rep: Homolog
           of Danio rerio "Novel hemicentin protein - Takifugu
           rubripes
          Length = 2555

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 15/20 (75%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 185 GIPPPTI-WSKDGIPEDTYG 129
           GIP PTI WSKDG P DT G
Sbjct: 552 GIPSPTITWSKDGHPVDTPG 571


>UniRef50_Q3W477 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Frankia sp.
           EAN1pec|Rep: Binding-protein-dependent transport systems
           inner membrane component - Frankia sp. EAN1pec
          Length = 298

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 236 YAILKEIHEPTTKMLPAGIPPPT-IWS---KDGIPEDTYGRLFFTFVPFICVLISI 81
           Y     + E +   L  G+PPP+  W     DG P    G  F  FVP +CV +++
Sbjct: 222 YMAFAVVAEASLSFLGLGVPPPSPSWGGMINDGRPY-LQGEPFLVFVPAVCVFLTV 276


>UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein
           kinase; n=6; Proteobacteria|Rep: Non-specific
           serine/threonine protein kinase - Pseudomonas putida F1
          Length = 481

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 127 LPYVSSGIPSLDHIVGGGIPAGSI 198
           L  +SSG+P+ D ++GGG+  GS+
Sbjct: 240 LARISSGVPTFDEMLGGGLATGSV 263


>UniRef50_Q2HCX7 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 464

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 227 LKEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGRL 123
           + +I EP+T+  P+G PP   +++   P+  YG L
Sbjct: 106 INDIWEPSTRPSPSGPPPRDSYTRQSSPDPNYGTL 140


>UniRef50_Q6KYY8 Cluster: NADH dehydrogenase; n=2;
           Thermoplasmatales|Rep: NADH dehydrogenase - Picrophilus
           torridus
          Length = 432

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 215 HEPTTKMLPAGIPPPTIWSKDGIPEDTYGRL 123
           HE    +   GI P T + KDGI +D YGR+
Sbjct: 217 HESDLVIFATGIEPNTSFIKDGIKKDGYGRI 247


>UniRef50_Q6W4X8 Cluster: Putative primase/helicase; n=2;
           Streptococcus thermophilus|Rep: Putative
           primase/helicase - Streptococcus thermophilus
          Length = 692

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 88  ISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVGS 213
           I   +NG     N P +S+G P LD  + GG   G +++VG+
Sbjct: 355 IQDFLNGIADSANTPNISTGFPILDKCLDGGFYEG-LYIVGA 395


>UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           DNA repair protein RadA - Syntrophomonas wolfei subsp.
           wolfei (strain Goettingen)
          Length = 451

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 PYVSSGIPSLDHIVGGGIPAGSIFVVG 210
           P  SSG+   D ++GGGI  GS+ ++G
Sbjct: 64  PRFSSGLSEFDRVLGGGIVPGSLILLG 90


>UniRef50_A2DHG2 Cluster: DNA repair protein RAD51 homolog,
           putative; n=1; Trichomonas vaginalis G3|Rep: DNA repair
           protein RAD51 homolog, putative - Trichomonas vaginalis
           G3
          Length = 115

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 112 KVKNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           +++  + Y+S+G   LD ++GGGI  GS+
Sbjct: 86  QIRKEMVYLSTGSSELDKLLGGGIKTGSV 114


>UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 541

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 115 VKNNLPYVSSGIPSLDHIVGGGIPAGSI 198
           +K+   ++S+G+ +LD  +GGGIP G I
Sbjct: 81  IKSPSKFISTGLHTLDSDLGGGIPTGEI 108


>UniRef50_Q9W213 Cluster: CG13521-PB, isoform B; n=5;
           Sophophora|Rep: CG13521-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 1429

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 191 PAGIPPPT-IWSKDGIPEDTYGRLFF 117
           P GIP PT IW KDG+P D    + F
Sbjct: 213 PKGIPEPTLIWIKDGVPLDDLKAMSF 238


>UniRef50_Q54IX8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 539

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 171 NYMV*GWNTGRYVW*VIFHFC--AIYMRTYIYKFSKTTHFLLIYQADFCKILF 19
           N MV G+N G YV+ +    C  A+ +   +   S T   L  Y++DFC I F
Sbjct: 245 NGMVIGFNPGHYVFSIASGSCSWAVPVTIPVEPISYTYETLWYYRSDFCSIEF 297


>UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5;
           Gammaproteobacteria|Rep: DNA repair protein RadA -
           Psychromonas sp. CNPT3
          Length = 472

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAGSIFVV 207
           VS+G+  LD ++GGGI  GS+ ++
Sbjct: 84  VSTGLSELDRVLGGGITLGSVVLI 107


>UniRef50_P74848 Cluster: Amino acid permease YeeF like protein;
           n=5; Salmonella|Rep: Amino acid permease YeeF like
           protein - Salmonella typhimurium
          Length = 448

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
 Frame = -2

Query: 134 YGRLFFTFVPFICVLISINFR---KLRIFY*YIKPIS----VKY-CLSIKIH 3
           +G LF  FV  +CV I  NFR   + RIF   I PI     + Y CL++ IH
Sbjct: 360 FGALFAFFVVNLCVFILFNFRMKAQRRIFAHVISPIMGMIVIGYVCLNMNIH 411


>UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3;
           Cyanobacteria|Rep: DNA repair protein radA - Lyngbya sp.
           PCC 8106
          Length = 564

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 136 VSSGIPSLDHIVGGGIPAGSIFVVG 210
           +SSG   LD ++GGGI  GS+ ++G
Sbjct: 87  MSSGYGELDRVLGGGIVPGSLVLIG 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,601,899
Number of Sequences: 1657284
Number of extensions: 5416322
Number of successful extensions: 14993
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 14519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14988
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -