Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ASU0 Cluster: Novel protein; n=23; Danio rerio|Rep: N...    37   0.43 
UniRef50_A2AST9 Cluster: Novel protein; n=6; Danio rerio|Rep: No...    37   0.43 
UniRef50_UPI0000F20ED8 Cluster: PREDICTED: hypothetical protein;...    35   2.3  
UniRef50_UPI0000F20E85 Cluster: PREDICTED: hypothetical protein;...    34   3.0  
UniRef50_UPI0000F20E5E Cluster: PREDICTED: hypothetical protein;...    34   3.0  
UniRef50_Q6E263 Cluster: Cysteine-rich repeat secretory protein ...    34   3.0  
UniRef50_UPI0000F21FF9 Cluster: PREDICTED: hypothetical protein;...    34   4.0  
UniRef50_UPI0000F20EBE Cluster: PREDICTED: hypothetical protein;...    33   9.3  
UniRef50_A4FXJ4 Cluster: Type I site-specific deoxyribonuclease,...    33   9.3  

>UniRef50_A2ASU0 Cluster: Novel protein; n=23; Danio rerio|Rep:
           Novel protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 199

 Score = 37.1 bits (82), Expect = 0.43
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +2

Query: 221 GLN--IFIINISIQGSFRISYIVYNCALCPNCNVT*TFVCTLINVFVTSLSWL--HIVFS 388
           G+N  I   ++S+     +  + ++ + C       + VC+++NV   SLSW   + V S
Sbjct: 90  GINRTIKTFSVSVYARLPVPVLTFSSSQCSPSQYNCSVVCSVVNVSAVSLSWYKGNSVLS 149

Query: 389 TISVENLNSEISL 427
           +ISV +L+  +SL
Sbjct: 150 SISVSDLSISLSL 162


>UniRef50_A2AST9 Cluster: Novel protein; n=6; Danio rerio|Rep: Novel
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 190

 Score = 37.1 bits (82), Expect = 0.43
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +2

Query: 218 AGLNIFIINISIQGSFRISYIVYNCALCPNCNVT*TFVCTLINVFVTSLSWL--HIVFST 391
           A L I   ++S+     +  ++ + + C +     + VC+++NV   SLSW   + V S 
Sbjct: 91  AKLIIKTFSVSVYARLPVPVLICSSSQCSSSQYNCSVVCSVMNVSAVSLSWYKGNSVLSN 150

Query: 392 ISVENLNSEISL 427
           ISV +L+  +SL
Sbjct: 151 ISVSDLSISLSL 162


>UniRef50_UPI0000F20ED8 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 280

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 VCTLINVFVTSLSWL--HIVFSTISVENLNSEISL 427
           +C+++NV   SLSW   + + S+ISV NL+S ISL
Sbjct: 141 LCSVVNVSAVSLSWYKGNSLLSSISVSNLSSSISL 175


>UniRef50_UPI0000F20E85 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 274

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 VCTLINVFVTSLSWL--HIVFSTISVENLNSEISL 427
           VC+++NV   SLSW   + V S+I+V +LN  ISL
Sbjct: 168 VCSVVNVRAVSLSWYKGNTVLSSINVSDLNKSISL 202


>UniRef50_UPI0000F20E5E Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 370

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 323 TFVCTLINVFVTSLSWL--HIVFSTISVENLNSEISL 427
           + VC+++NV   SLSW   + V S ISV +L+S +SL
Sbjct: 142 SLVCSVVNVSAVSLSWYKGNSVLSKISVSDLSSSVSL 178


>UniRef50_Q6E263 Cluster: Cysteine-rich repeat secretory protein 39
           precursor; n=2; Arabidopsis thaliana|Rep: Cysteine-rich
           repeat secretory protein 39 precursor - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 319

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 590 CHIIWSFIKKDTQGGYLEQGHKYTALKLQKHGI 688
           CH+I+ F + DT G  +   HKY   +  +HG+
Sbjct: 140 CHLIYKFERIDTPGAQVNNHHKYKLFETPEHGL 172


>UniRef50_UPI0000F21FF9 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 264

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 326 FVCTLINVFVTSLSWL--HIVFSTISVENLNSEISL 427
           F+C ++NV   SLSW   + V S+ISV NL+  +SL
Sbjct: 146 FLCLVLNVSAVSLSWYKENSVLSSISVSNLSISLSL 181


>UniRef50_UPI0000F20EBE Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 291

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 242 NISIQGSFRISYIVYNCALCPN-CNVT*TFVCTLINVFVTSLSWL--HIVFSTISVENLN 412
           NI++     I  +  +C+     C+V    VC+++NV   SLSW   + V S+ISV +L+
Sbjct: 115 NITVYARLLIPVLKRDCSSSVQYCSV----VCSVVNVSAVSLSWYKGNSVLSSISVSDLS 170

Query: 413 SEISL 427
             +SL
Sbjct: 171 ISLSL 175


>UniRef50_A4FXJ4 Cluster: Type I site-specific deoxyribonuclease,
           HsdR family; n=3; cellular organisms|Rep: Type I
           site-specific deoxyribonuclease, HsdR family -
           Methanococcus maripaludis
          Length = 1024

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -3

Query: 411 FKFSTEIVENTICSHDKDVTKTLIKVHTNVYVTLQLGHN 295
           +KFS + +EN I   D  +T+ LIK + +VY  L LG++
Sbjct: 66  YKFSEKSIENAIADLDVPLTEGLIKSNEHVYDQLILGNS 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,600,752
Number of Sequences: 1657284
Number of extensions: 15570666
Number of successful extensions: 30727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30719
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)