Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30019
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q57BR4 Cluster: AsmA family protein; n=6; Brucellaceae|...    34   4.4  
UniRef50_UPI00006A0E2B Cluster: UPI00006A0E2B related cluster; n...    33   7.6  

>UniRef50_Q57BR4 Cluster: AsmA family protein; n=6;
           Brucellaceae|Rep: AsmA family protein - Brucella abortus
          Length = 645

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 595 NSILVVRRQVIEDLRASSGELRFNVKSI 512
           N IL    Q++ DL+++SGELRFN   I
Sbjct: 437 NGILQANVQIVRDLKSASGELRFNASDI 464


>UniRef50_UPI00006A0E2B Cluster: UPI00006A0E2B related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A0E2B UniRef100 entry -
           Xenopus tropicalis
          Length = 559

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 28  YHKLQNLVNIGAVKAKQKQLLNVSCSC*SHVTCGRCSQQNSTTT 159
           +HKLQ      A   K K+ ++ +C    H  CGRC + +  TT
Sbjct: 5   FHKLQEDTTCYACLRKSKKYISFACG---HTLCGRCRESHGATT 45


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,880,129
Number of Sequences: 1657284
Number of extensions: 11320026
Number of successful extensions: 21644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21642
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)