Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0030
         (567 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0KH26 Cluster: Chemotaxis protein CheW; n=14; Proteoba...    34   2.0  
UniRef50_A6RCH4 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q1E9D5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.5  

>UniRef50_A0KH26 Cluster: Chemotaxis protein CheW; n=14;
           Proteobacteria|Rep: Chemotaxis protein CheW - Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240)
          Length = 190

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 231 LEGLVGLKGKVETITDNLGNFGFSPATLTVRS*IEYMFTIHRDD 362
           + G++ L+G V ++ D    FG +P+++T RS I  +  +H DD
Sbjct: 60  IRGVINLRGAVVSVVDLNARFGNAPSSITRRSCIVIIEGVHPDD 103


>UniRef50_A6RCH4 Cluster: Putative uncharacterized protein; n=1;
           Ajellomyces capsulatus NAm1|Rep: Putative
           uncharacterized protein - Ajellomyces capsulatus NAm1
          Length = 1307

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 221 CLRVRRTRRAKGKSRDYHRQSWKLWFLSGNIDSSKLNR 334
           C  +RR R A  K  DY R++W L  + G++  SK+ R
Sbjct: 776 CTSIRRVRVALKKYFDYDRENWDLIVIRGDVTRSKVPR 813


>UniRef50_Q1E9D5 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 1294

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 221 CLRVRRTRRAKGKSRDYHRQSWKLWFLSGNIDSSKLNR 334
           C  VRR + A  K  +Y R++W L  + G+I+ SK+ R
Sbjct: 772 CTSVRRVKAALKKYFEYDRENWDLIVIRGDINRSKVPR 809


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,141,783
Number of Sequences: 1657284
Number of extensions: 7481959
Number of successful extensions: 13145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13145
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)