Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep: T...    42   0.007
UniRef50_A7AQH3 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  
UniRef50_Q8U4F4 Cluster: Putative uncharacterized protein PF0134...    32   7.9  

>UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep:
           Transposase - Ceratitis rosa (Natal fruit fly)
          Length = 361

 Score = 42.3 bits (95), Expect = 0.007
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -1

Query: 229 IWSSKNLRGLLNNKCTHPQHDPVWCGFWPEGIIEPDFWK 113
           IW+++N R ++  K  HPQ   VWCG W  GII P F++
Sbjct: 176 IWANENPRVIVE-KPVHPQRVTVWCGLWAGGIIGPYFFQ 213


>UniRef50_A7AQH3 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 589

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 287 PKHYTKI-ATDDFRYLPNFVYLEFQEPTWIVEQQMHP 180
           P+H+  +   +DF+Y+PN + +  + P  + E+QM P
Sbjct: 412 PRHFNMMQVNEDFKYIPNVMMMPEKVPYMLPEEQMDP 448


>UniRef50_Q8U4F4 Cluster: Putative uncharacterized protein PF0134;
           n=2; Thermococcaceae|Rep: Putative uncharacterized
           protein PF0134 - Pyrococcus furiosus
          Length = 202

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 381 LNWVSVLSIINYRKWXQXNLII*ISGSQTYFVY 479
           + W  +L +  Y+ W   NL + + GS  YF+Y
Sbjct: 170 VGWAFILMLAEYQPWIDDNLAVPLVGSALYFLY 202


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,102,796
Number of Sequences: 1657284
Number of extensions: 10373171
Number of successful extensions: 20993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20991
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)