Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q171Z5 Cluster: Putative uncharacterized protein; n=1; ...    29   2.4  
UniRef50_UPI0000D5715D Cluster: PREDICTED: similar to CG13643-PA...    34   4.8  
UniRef50_A0US61 Cluster: Putative uncharacterized protein; n=1; ...    34   4.8  
UniRef50_Q16UJ0 Cluster: Wd-repeat protein; n=3; Endopterygota|R...    34   4.8  
UniRef50_A6S4T6 Cluster: Putative uncharacterized protein; n=2; ...    33   8.4  

>UniRef50_Q171Z5 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 843

 Score = 28.7 bits (61), Expect(2) = 2.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 613 ELLSGAHSLNIAASGNRLXEERKK 684
           E+   AHS NIAASGN L  ER +
Sbjct: 715 EIFRTAHSQNIAASGNDLILERAR 738



 Score = 25.0 bits (52), Expect(2) = 2.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 514 PANNYDESGEDDGQYXPPQGEDDGLYRPEV 603
           P+    +  EDDGQY P   E D  YR  V
Sbjct: 647 PSTTTTDIDEDDGQYHPELYEKD-FYRNRV 675


>UniRef50_UPI0000D5715D Cluster: PREDICTED: similar to CG13643-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG13643-PA - Tribolium castaneum
          Length = 815

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +1

Query: 511 APANNYDESGEDDGQYXPPQGEDDGLYRPEVXDRELLSGAHSLNIAASGNRLXEERK 681
           A +N +DE+  DDG Y P    +D          E L  AHS NIA+S N   +  K
Sbjct: 693 ARSNRFDETQYDDGSYNPKYDRNDD---------EFLKTAHSQNIASSRNEYSKSTK 740


>UniRef50_A0US61 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia multivorans ATCC 17616|Rep: Putative
           uncharacterized protein - Burkholderia multivorans ATCC
           17616
          Length = 455

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 64  AAPKVNKKQGLXELYNNEGQSTAGYNLXNDNRS-FKVRNGFNVDEAPR 204
           A PK N+K GL  L+ + GQ TAGY + N+NRS F+V    N   A R
Sbjct: 246 AGPK-NEKAGL--LFESAGQRTAGYYVFNENRSLFEVLLHANHGSAQR 290


>UniRef50_Q16UJ0 Cluster: Wd-repeat protein; n=3; Endopterygota|Rep:
            Wd-repeat protein - Aedes aegypti (Yellowfever mosquito)
          Length = 985

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
 Frame = +1

Query: 325  NYNSVPYEPEKNNVGPYSKTNYFNSPXXXXXXXXXXXXXXXYRPEPPANLNKVAYNTNIG 504
            N+N   + P     GP      FNS                  P PP       +N N G
Sbjct: 872  NFNPNNFNPN----GPPGMAPNFNSGPPPNFNSGPPGNFNFNGPPPPPG----GFNNNFG 923

Query: 505  XNAPANNYDESGEDDGQYXPPQG--EDDG 585
               P NN++  G + G + P  G   DDG
Sbjct: 924  AGPPPNNFNNFGNNGGNFGPDHGGNNDDG 952


>UniRef50_A6S4T6 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 727

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 448 YRPEPPAN-LNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQ 570
           Y P  PA  +   + +   G N P NNY +  +  GQ+ PPQ
Sbjct: 166 YNPHNPAPYIGPPSGSQGPGHNGPPNNYPQQWQQQGQHGPPQ 207


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,054,789
Number of Sequences: 1657284
Number of extensions: 9641489
Number of successful extensions: 21094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21046
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)