Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a16
(676 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 361 8e-99
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 328 1e-88
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 301 1e-80
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 271 9e-72
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 271 1e-71
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 239 6e-62
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 221 1e-56
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 189 6e-47
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 150 3e-35
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 134 1e-30
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 119 7e-26
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 7e-25
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 115 1e-24
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 104 2e-21
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 94 2e-18
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 77 4e-13
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 68 2e-10
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 7e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 62 9e-09
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 61 2e-08
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 57 3e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 56 6e-07
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 56 8e-07
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 4e-06
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 51 2e-05
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 50 4e-05
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 50 4e-05
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 2e-04
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 46 8e-04
UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 39 0.13
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 38 0.29
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.51
UniRef50_A5ASW3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;... 33 6.3
UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina ... 33 6.3
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 33 8.4
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 8.4
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 8.4
UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;... 33 8.4
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.4
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 361 bits (888), Expect = 8e-99
Identities = 163/208 (78%), Positives = 184/208 (88%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 561 QCGRADGYILEGKELEFYLRKIKSKRAK 644
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 328 bits (805), Expect = 1e-88
Identities = 152/208 (73%), Positives = 178/208 (85%), Gaps = 2/208 (0%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
+TGNF+W SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LP
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120
Query: 381 LGRKKGAKLTEAEEA--IINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASR 554
LGRK+ K + E+ ++ KKRS+K +KYL RQ+ KVE ALE+QF +GR+LAC++SR
Sbjct: 121 LGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSR 180
Query: 555 PGQCGRADGYILEGKELEFYLRKIKSKR 638
PGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 181 PGQCGRSDGYILEGKELEFYLKKIKSKK 208
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 301 bits (738), Expect = 1e-80
Identities = 146/208 (70%), Positives = 167/208 (80%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
LGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPG
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 160
Query: 561 QCGRADGYILEGKELEFYLRKIKSKRAK 644
QCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 161 QCGRADGYVLEGKELEFYLRKIKARKGK 188
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 271 bits (665), Expect = 9e-72
Identities = 135/217 (62%), Positives = 162/217 (74%), Gaps = 9/217 (4%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 197
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 198 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 377
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 378 PLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 533
+GRKK A+ E E A K+S RK R+ ++ +EEQF +GRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180
Query: 534 LACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 644
LAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 271 bits (664), Expect = 1e-71
Identities = 122/149 (81%), Positives = 134/149 (89%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKY 467
LGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 239 bits (584), Expect = 6e-62
Identities = 122/206 (59%), Positives = 151/206 (73%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
D+GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L
Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLE 120
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
LG K +E +A S+K A A V L +QF +GRLLAC++SRPG
Sbjct: 121 LG-----KSSEDPQA------SEKVA---------ALVPRTLLDQFSSGRLLACISSRPG 160
Query: 561 QCGRADGYILEGKELEFYLRKIKSKR 638
QCGR DGY+LEG+EL FY R++ K+
Sbjct: 161 QCGRCDGYVLEGEELNFYRRRMDKKK 186
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 221 bits (540), Expect = 1e-56
Identities = 116/219 (52%), Positives = 146/219 (66%), Gaps = 13/219 (5%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGI R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
DTGNF+W SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY +
Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGID 120
Query: 381 L-GRKKGAKLTEAEE--------AIINK----KRSQKTARKYLARQRLAKVEGALEEQFH 521
L KK K A E A +K K S K R++ R+R +VE A+ +Q
Sbjct: 121 LDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQLR 180
Query: 522 TGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 638
GR+LA + SRPGQ GRADG +LEG EL+FYL++++ K+
Sbjct: 181 EGRVLARITSRPGQSGRADGILLEGAELQFYLKRLEKKK 219
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 189 bits (460), Expect = 6e-47
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 30/236 (12%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGI+RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
+ GNFSW S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFYGKD 120
Query: 381 LGRKKGAKLTEA-----EEAII------NKKRS---------------QKTARKYLARQ- 479
+ K E+ E+ ++ NK+++ KT +K A++
Sbjct: 121 IASTDYYKSLESATFKTEKKVVVPKEEENKEKTIAQQIAETQVALMNPSKTMQKKYAKKL 180
Query: 480 ---RLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 638
+ K + AL E F +GR+LAC++SRPGQ G +GYILEGKEL+FY +KI K+
Sbjct: 181 EVLKNMKFDEALLEGFQSGRVLACISSRPGQTGSVEGYILEGKELDFYSKKISDKK 236
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 150 bits (364), Expect = 3e-35
Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Frame = +3
Query: 66 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 242
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 243 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 422
KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 134 bits (325), Expect = 1e-30
Identities = 85/205 (41%), Positives = 119/205 (58%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGI+R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 380
GNFS+ S T K +I+ V +N S+NELVRT TL K +IV +D + TL
Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLDIAKTL----IYNTLI 116
Query: 381 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
K+ AE+ I NK L +Q +G++LA + SRPG
Sbjct: 117 RNLNSNPKI--AEDTISNK---------------------ILIDQILSGKILARICSRPG 153
Query: 561 QCGRADGYILEGKELEFYLRKIKSK 635
Q GRADGYILEG+EL+++L+KI+ K
Sbjct: 154 QSGRADGYILEGQELDYFLKKIQKK 178
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 119 bits (286), Expect = 7e-26
Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 9/120 (7%)
Frame = +3
Query: 312 KNAIVVVDATPFRQWYESHYTLPLGR-----KKGAKLT--EAEEAIINKKRSQKTARKYL 470
K+AIV + PFRQW+E+ Y LG KKG +T EE + KKRS+ +K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 471 ARQRL--AKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 644
RQ L A VE +L+E+F TGRLLAC++S+PGQ GRADGY+ EGKELEF+ +K+K+K+AK
Sbjct: 61 TRQALPQANVEESLKEEFVTGRLLACISSKPGQVGRADGYLFEGKELEFFSKKLKAKKAK 120
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 116 bits (278), Expect = 7e-25
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGISRD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDV 263
++GNFSWGSE RK R+I V
Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81
Score = 73.7 bits (173), Expect = 4e-12
Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 387 RKKGAKLTEAEEAIINKKRSQKTARKYLAR-QRLAKVEGALEEQFHTGRLLACVASRPGQ 563
R + + E I K R +K AR KVE ALE+QF GRL A V+SRPGQ
Sbjct: 59 RLESGNFSWGSEGIARKVRVIVVEKKQAARFAAQGKVEPALEKQFEAGRLYAVVSSRPGQ 118
Query: 564 CGRADGYILEGKELEFYLRKIK 629
GR DGYILEG+EL FY R I+
Sbjct: 119 SGRVDGYILEGEELAFYQRAIR 140
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 115 bits (276), Expect = 1e-24
Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 9/119 (7%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGG 173
MGI+ D +KR TG + KKRKY LGR ANT+L Q+I ++R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 174 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 350
N K RALRL G+F+WGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 510 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSK 635
+Q +LA ++SRPGQ G ADGYILEG EL FY +K+ K
Sbjct: 133 DQIRGDHILARISSRPGQVGTADGYILEGPELLFYQKKLAPK 174
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 104 bits (250), Expect = 2e-21
Identities = 50/110 (45%), Positives = 72/110 (65%)
Frame = +3
Query: 21 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 200
MGI+ HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 201 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 350
D G+F + + R +++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
Score = 52.8 bits (121), Expect = 7e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +3
Query: 492 VEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSK 635
V+ +L E F G L A + SRPGQ G A G++L+G EL+FY K K
Sbjct: 120 VDPSLHESFEKGHLYAIITSRPGQVGMAQGHVLQGDELKFYADKFNKK 167
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 94.3 bits (224), Expect = 2e-18
Identities = 46/86 (53%), Positives = 55/86 (63%)
Frame = +3
Query: 387 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQC 566
R+ + T EE ++NKKRS+KT +KY R AC+ASRPGQC
Sbjct: 64 RRAPSWYTPEEEEVLNKKRSKKTQKKYDERXXXXXXXXXXXXXXXXXXXXACIASRPGQC 123
Query: 567 GRADGYILEGKELEFYLRKIKSKRAK 644
GRADGYILEGKELEFYLRKIK+K+ K
Sbjct: 124 GRADGYILEGKELEFYLRKIKAKKGK 149
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 77.0 bits (181), Expect = 4e-13
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +3
Query: 48 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 224
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 225 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 347
+ ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 230
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 231 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
+TRK +I V N+++ V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 66.1 bits (154), Expect = 7e-10
Identities = 36/92 (39%), Positives = 54/92 (58%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 230
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 231 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
T+KT+I V N+++ VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 62.5 bits (145), Expect = 9e-09
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 227
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 228 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 335
E +K +II V N +N+ V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 61.3 bits (142), Expect = 2e-08
Identities = 39/92 (42%), Positives = 54/92 (58%)
Frame = +3
Query: 285 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 464
ELVRT+TLVKNAI+ Q Y HY L +G KK A T ++ +++ RK
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRK 78
Query: 465 YLARQRLAKVEGALEEQFHTGRLLACVASRPG 560
RQ+ K++ +EEQF +GRLLA ++S PG
Sbjct: 79 LEKRQQDHKLDPHIEEQFGSGRLLAAISSYPG 110
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 57.2 bits (132), Expect = 3e-07
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 227
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68
Query: 228 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
RK RII V+ N +N + R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 56.4 bits (130), Expect = 6e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 230
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 231 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 335
T+K ++ V N +N VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 56.0 bits (129), Expect = 8e-07
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 227
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 228 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 338
+ +K +I++++ +N EL R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 53.6 bits (123), Expect = 4e-06
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +3
Query: 42 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 206
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 207 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
N + + RI +VV N ++ R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 51.2 bits (117), Expect = 2e-05
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +3
Query: 21 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKY 185
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 186 RALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
+A ++ S RK RI+ +V ++ E R +VK A++
Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +3
Query: 54 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 233
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N +
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 234 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
+K++I+ V+ N +NN+ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 48 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 224
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 225 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
+ +K + +V+ N +N +R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/92 (30%), Positives = 45/92 (48%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 230
R+ +G + + KR E GR A TR+G + + +RG TK RA N +
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69
Query: 231 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
S++ ++ V+ N +N+ VR + K AIV
Sbjct: 70 NSSKNVEMLTVLENGANSHFVRRNIITKGAIV 101
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 46.0 bits (104), Expect = 8e-04
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +3
Query: 51 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 224
++ +GGK+ +RK +K L G P +LG V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 225 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
E + K +II ++ +N + R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum
pendens (strain Hrk 5)
Length = 128
Score = 38.7 bits (86), Expect = 0.13
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 51 RRATGG-KRAPIRKKRKYELGR-PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 224
R+ TGG K ++ KRKY GR P + V++RG K + N
Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69
Query: 225 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 326
E T + +II V+ N SN + R + K AI+
Sbjct: 70 KEGKTVRAQIIKVLDNPSNKDFARRGIISKGAIL 103
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 37.5 bits (83), Expect = 0.29
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +3
Query: 225 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGR 389
SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 390 KKGAKLTEAEEAIINKKRS 446
G L A+E +INK+ +
Sbjct: 234 MSGDLLNYAQE-LINKQNT 251
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.51
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 57 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 167
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_A5ASW3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 738
Score = 33.9 bits (74), Expect = 3.6
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 387 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 557
+K+G K E I + RK RQ+ K++ +EEQF +GRLLA ++S P
Sbjct: 273 KKEGEKGDGPVEEI---NKGNHVVRKLEKRQQDHKLDPHIEEQFGSGRLLAAISSYP 326
>UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 33.1 bits (72), Expect = 6.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 408 TEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 518
T EE I+NKK S+K +KY ++ AK+ L E F
Sbjct: 105 TPEEEEILNKKHSKKIQKKYEEWKKKAKISLLLREHF 141
>UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina
acetivorans|Rep: Predicted protein - Methanosarcina
acetivorans
Length = 90
Score = 33.1 bits (72), Expect = 6.3
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 357 YESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA-RKYLARQRLAKVEGALEE 512
Y + +TL R + A EA E ++ K +K A K LA+ L K+EG LEE
Sbjct: 31 YRNIWTLNGSRNRSATSKEACEKLLAKNCLRKIACEKLLAKNCLRKIEGLLEE 83
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 32.7 bits (71), Expect = 8.4
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 34 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALS 144
G S GP G + PYA + S S G+PL TPGS LS
Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 321 IVVVDATPFRQWYESHYTLPLGRKK 395
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 32.7 bits (71), Expect = 8.4
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 54 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 230
R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 231 CSTRKTRIIDV 263
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 803
Score = 32.7 bits (71), Expect = 8.4
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +1
Query: 34 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSALSESTPFVHVVEILSTVR-CVWTPV 210
GI + GN Y G P GS L P + + STV+ WTP+
Sbjct: 488 GIRWTEDKKTFGNANQYVVEAGFLTGAPFNPDGSGLQNGDPLMGPLGQRSTVKDTAWTPM 547
Query: 211 TSLGDR 228
SL R
Sbjct: 548 ASLSYR 553
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 8.4
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 336 ATPFRQWYESHYTLPLGRKKGAKLTEAE 419
ATPF Q + +HY L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,323,912
Number of Sequences: 1657284
Number of extensions: 13222645
Number of successful extensions: 38558
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 37146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38528
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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