Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A07
(561 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-direct... 58 2e-07
UniRef50_Q0MXR2 Cluster: Reverse transcriptase; n=12; Maculinea|... 50 3e-05
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 50 4e-05
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 48 2e-04
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 48 2e-04
UniRef50_UPI0000D57957 Cluster: PREDICTED: similar to RNA-direct... 46 5e-04
UniRef50_UPI0000D578A4 Cluster: PREDICTED: similar to RNA-direct... 46 5e-04
UniRef50_Q5TTM4 Cluster: ENSANGP00000029714; n=1; Anopheles gamb... 46 8e-04
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-... 44 0.002
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 44 0.003
UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-direct... 44 0.003
UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup... 44 0.003
UniRef50_UPI0000D578A9 Cluster: PREDICTED: similar to RNA-direct... 43 0.004
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 42 0.007
UniRef50_UPI0000E47DA3 Cluster: PREDICTED: similar to ENSANGP000... 41 0.017
UniRef50_Q8IS68 Cluster: LINE1-like RNA-directed DNA polymerase;... 40 0.030
UniRef50_Q8IS66 Cluster: RNA-directed DNA polymerase; n=1; Eupry... 40 0.040
UniRef50_Q5EFH0 Cluster: Reverse transcriptase; n=1; Liobuthus k... 40 0.053
UniRef50_Q4QQE2 Cluster: Endonuclease-reverse transcriptase; n=3... 40 0.053
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 39 0.069
UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona intes... 39 0.069
UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Re... 38 0.12
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 38 0.12
UniRef50_Q4VZW9 Cluster: Putative reverse transcriptase; n=8; Cu... 38 0.16
UniRef50_Q4EC81 Cluster: Pol protein; n=2; Wolbachia endosymbion... 38 0.21
UniRef50_UPI00015B43B0 Cluster: PREDICTED: similar to reverse tr... 36 0.49
UniRef50_Q6UJ39 Cluster: Pol protein; n=1; Drosophila virilis|Re... 36 0.49
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 36 0.65
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 36 0.65
UniRef50_Q0TVA8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.65
UniRef50_Q6IH11 Cluster: HDC03720; n=1; Drosophila melanogaster|... 36 0.85
UniRef50_Q86GH0 Cluster: Pol protein; n=1; Drosophila americana|... 35 1.1
UniRef50_Q6IFU2 Cluster: Pol polyprotein; n=6; Schistosoma|Rep: ... 35 1.5
UniRef50_Q4VZV8 Cluster: Putative reverse transcriptase; n=4; Cu... 35 1.5
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 35 1.5
UniRef50_UPI0000E4874D Cluster: PREDICTED: similar to endonuclea... 34 2.0
UniRef50_A5V043 Cluster: Protein kinase; n=3; Chloroflexaceae|Re... 34 2.6
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 34 2.6
UniRef50_Q4P0U8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_Q0K451 Cluster: Transcriptional regulator, LysR-family;... 33 4.6
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 33 4.6
UniRef50_UPI000155CC10 Cluster: PREDICTED: similar to ribosomal ... 33 6.0
UniRef50_UPI0000F0A504 Cluster: hypothetical protein; n=1; uncul... 32 8.0
UniRef50_UPI000155BCAC Cluster: PREDICTED: similar to ZNF235 pro... 32 8.0
UniRef50_UPI000049922F Cluster: apyrase; n=2; Entamoeba histolyt... 32 8.0
UniRef50_Q745F5 Cluster: Putative uncharacterized protein; n=2; ... 32 8.0
UniRef50_Q3K6E1 Cluster: Predicted periplasmic ligand-binding se... 32 8.0
>UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=2; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 971
Score = 57.6 bits (133), Expect = 2e-07
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 23/139 (16%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEG-DASSEIPVRAG 183
VFL++EKAFD+VW+ GLIYKL Q + + + SF HR + V EG + S+ I + AG
Sbjct: 605 VFLDIEKAFDKVWHAGLIYKLKQLHFSDQLTQLIHSFLSHRTLKVREGNELSNPISINAG 664
Query: 184 L----LIS-------------RAQL----VLFA-DVAYFTLSLNKNYAPVYLRPTLDALP 297
+ ++S ++Q+ +LFA D A +T A L+ LD
Sbjct: 665 VPQGSVLSPLLYLIYCHDIPIKSQIATKTILFADDTALWTGQKTSFKATQVLQECLDEFQ 724
Query: 298 DWLDRWRLSANVA*TQAMI 354
W +WR+ N + A++
Sbjct: 725 KWASKWRIKPNPTKSSAIL 743
>UniRef50_Q0MXR2 Cluster: Reverse transcriptase; n=12;
Maculinea|Rep: Reverse transcriptase - Maculinea teleius
Length = 180
Score = 50.4 bits (115), Expect = 3e-05
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV-VVVEGDASSEIPVRA 180
VFL+MEKAFD VW+EGL+ KL ++ +R VASF R V V G S+E P+ A
Sbjct: 122 VFLDMEKAFDSVWHEGLLCKLIRANVPPPLVRLVASFLSGRTFRVRVNGVFSNERPITA 180
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 50.0 bits (114), Expect = 4e-05
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVRAG 183
VFL++ KAFD VW++GLI+KL Q+ ++ + SF R V + S + AG
Sbjct: 1056 VFLDVAKAFDAVWHDGLIHKLHQTGIPLAMVQMIRSFLVGRRFQVRINNSVSDPQDLEAG 1115
Query: 184 ---------LLIS----------RAQLVLFA-DVAYFTLSLNKNYAPVYLRPTLDALPDW 303
LL S R L ++A D A T S A YL+ +++ + +W
Sbjct: 1116 VPQGSVLSPLLYSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVECIENW 1175
Query: 304 LDRWRLSANVA*TQAMISGRFPSYPSVSPEG 396
RW ++ N ++A++ R VSP+G
Sbjct: 1176 CRRWLINVNPDKSRALLLAR----RRVSPDG 1202
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 47.6 bits (108), Expect = 2e-04
Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV-VVVEGDASSEIPVRAG 183
+F ++ KAFD+VW+ GLI+KL + + F +R VEG SS P+ AG
Sbjct: 593 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 652
Query: 184 ---------LLIS----------RAQLVLFA-DVAYFTLSLNKNYAPVYLRPTLDALPDW 303
LL S QL LFA D + S NK+ L+ L W
Sbjct: 653 VPQGSVLSPLLFSLFINDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQW 712
Query: 304 LDRWRLSANVA*TQAMISGRFPSYPSVSPEGRR 402
+WR+ N A + A++ R S P +S RR
Sbjct: 713 FRKWRIDINPAKSTAVLFQRGNS-PLISSRIRR 744
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein;
n=80; Culicimorpha|Rep: Reverse transcriptase homolog
protein - Chironomus thummi
Length = 883
Score = 47.6 bits (108), Expect = 2e-04
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASSEIPV 174
++FL++EKAFDRVW+ GL+YK+ + R ++ V SF R V SEI V
Sbjct: 589 MIFLDVEKAFDRVWHPGLLYKMLKLRFPLPLIKTVRSFLSERSFAVFIKGQFSEIKV 645
>UniRef50_UPI0000D57957 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase), partial; n=2; Tribolium castaneum|Rep:
PREDICTED: similar to RNA-directed DNA polymerase from
mobile element jockey (Reverse transcriptase), partial -
Tribolium castaneum
Length = 466
Score = 46.4 bits (105), Expect = 5e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR-VVVVVEGDASSEIPVRAG 183
VFL++E+AFDRVW++GLI K F++ + SF +R V V+ S +P+ +G
Sbjct: 355 VFLDVERAFDRVWHDGLIQKFLSHNINLNFIKLIDSFLSNRSCKVKVQNSFSYPVPLLSG 414
Query: 184 L 186
+
Sbjct: 415 V 415
>UniRef50_UPI0000D578A4 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 678
Score = 46.4 bits (105), Expect = 5e-04
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR-VVVVVEGDASSEIPVRAG 183
VFL++E+AFDRVW++GLI K F++ + SF +R V V+ S +P+ +G
Sbjct: 315 VFLDVERAFDRVWHDGLIQKFLSHNINLNFIKLIDSFLSNRSCKVKVQNSFSYPVPLLSG 374
Query: 184 L 186
+
Sbjct: 375 V 375
>UniRef50_Q5TTM4 Cluster: ENSANGP00000029714; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000029714 - Anopheles gambiae
str. PEST
Length = 211
Score = 45.6 bits (103), Expect = 8e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASSEIP-VRA 180
++ N+EKAFD VW++GLI+KL Q + ++ + ++ R VV G SE+ V A
Sbjct: 105 IMMRNVEKAFDNVWHDGLIHKLLQYQLPLHLIKMIKNYLHQRTFQVVLGPYVSEVQRVPA 164
Query: 181 GL 186
GL
Sbjct: 165 GL 166
>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
transcriptase-like protein; n=25; Arthropoda|Rep:
Endonuclease and reverse transcriptase-like protein -
Bombyx mori (Silk moth)
Length = 986
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR-VVVVVEGDASSEIPVRAG 183
V L++ KAFD VW+ L+ KL + +ASF D R + VVV+GD S + + AG
Sbjct: 604 VSLDIAKAFDWVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 663
Query: 184 L 186
+
Sbjct: 664 V 664
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVR 177
++ L++++AFD+VW++GLIYKL + + + SF D + V V SS P+
Sbjct: 910 AMALLDVQQAFDKVWHDGLIYKLIRINCPHYLIGTIQSFLTDRSLRVKVGHSLSSSKPIT 969
Query: 178 AGL 186
AG+
Sbjct: 970 AGV 972
>UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to RNA-directed DNA polymerase from
mobile element jockey (Reverse transcriptase), partial -
Tribolium castaneum
Length = 830
Score = 43.6 bits (98), Expect = 0.003
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASSEIPVRAGL 186
VFL++ KAFD VW++ LIYKL Q+ ++ + SF D R +E + V + L
Sbjct: 634 VFLDVAKAFDAVWHDRLIYKLHQTGIPLAMVQMIRSFLDGRRFQDLEAGV-PQGSVLSPL 692
Query: 187 LIS----------RAQLVLFA-DVAYFTLSLNKNYAPVYLRPTLDALPDWLDR 312
L S R L ++A D A T S A YL+ +++ + +W R
Sbjct: 693 LYSIFTHDIPKTDRTTLAIYADDTAILTRSKQPYMATRYLQESVERIENWCRR 745
>UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster
subgroup|Rep: Pol protein - Drosophila melanogaster
(Fruit fly)
Length = 1103
Score = 43.6 bits (98), Expect = 0.003
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFL-RKVASFHDHRVVVV-VEGDASSEI-P 171
S FL++ +AFDRVW++GL+YKL SR R+L + ++ +R V ++G+ +S I
Sbjct: 627 SATFLDITEAFDRVWHDGLLYKL--SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGN 684
Query: 172 VRAGL 186
+RAG+
Sbjct: 685 IRAGV 689
>UniRef50_UPI0000D578A9 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 894
Score = 43.2 bits (97), Expect = 0.004
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR 129
VFL++ KAFD VW++GLIYKL Q+ ++ + SF D R
Sbjct: 779 VFLDVAKAFDAVWHDGLIYKLHQTGIPLAMVQMIRSFLDGR 819
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 42.3 bits (95), Expect = 0.007
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 FLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV-VVVEGDASSEIPVRAGL 186
FL++++AFDRVW+ GL+YK + + +L V SF + R V V+G SS P+ AG+
Sbjct: 584 FLDIQQAFDRVWHPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDGYKSSIKPIAAGV 642
>UniRef50_UPI0000E47DA3 Cluster: PREDICTED: similar to
ENSANGP00000029527; n=13; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000029527
- Strongylocentrotus purpuratus
Length = 1715
Score = 41.1 bits (92), Expect = 0.017
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVAS-FHDHRVVVVVEGDASSEIPVRA 180
+ L+ EKAFD+VW+ GL KLT + + L V S ++ + V+ +G S P+
Sbjct: 1094 VALLDAEKAFDKVWHAGLFQKLTSTSIHPQHLNMVRSLYNSMQSQVLWDGTVSDPFPILQ 1153
Query: 181 GL 186
G+
Sbjct: 1154 GV 1155
>UniRef50_Q8IS68 Cluster: LINE1-like RNA-directed DNA polymerase;
n=1; Euprymna scolopes|Rep: LINE1-like RNA-directed DNA
polymerase - Euprymna scolopes
Length = 128
Score = 40.3 bits (90), Expect = 0.030
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 NMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV-VVVEGDASSEIPVRAGL 186
++ KAFD+VW++GL++K++ + SF R++ VVV+G S + AG+
Sbjct: 52 DISKAFDKVWHKGLLHKISSYGITGNVFSIIKSFLSDRLIRVVVDGQKSEACNINAGV 109
>UniRef50_Q8IS66 Cluster: RNA-directed DNA polymerase; n=1; Euprymna
scolopes|Rep: RNA-directed DNA polymerase - Euprymna
scolopes
Length = 202
Score = 39.9 bits (89), Expect = 0.040
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV 135
V L++ KAFDRVW+EGL+ K+ R L + SF D R +
Sbjct: 157 VALDISKAFDRVWHEGLLKKIRSYGITGRILNIIKSFLDKRKI 199
>UniRef50_Q5EFH0 Cluster: Reverse transcriptase; n=1; Liobuthus
kessleri|Rep: Reverse transcriptase - Liobuthus kessleri
Length = 194
Score = 39.5 bits (88), Expect = 0.053
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR-VVVVVEGDASSEIPVRAG 183
+FL++ KAFD+VW+EGL++K+ Q + + + ++R + SS + AG
Sbjct: 133 IFLDIAKAFDKVWHEGLLFKMIQMNFSASLIHLIKDYLNNRHFYTEINKQKSSTRSITAG 192
Query: 184 L 186
+
Sbjct: 193 V 193
>UniRef50_Q4QQE2 Cluster: Endonuclease-reverse transcriptase; n=3;
Bilateria|Rep: Endonuclease-reverse transcriptase -
Schistosoma mansoni (Blood fluke)
Length = 945
Score = 39.5 bits (88), Expect = 0.053
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVRA 180
++F+++ KAFD+V + GL KL + ++ F H+ R V V G SS PV++
Sbjct: 587 VIFIDLSKAFDKVSHSGLKLKLESFGIHYAVIDWISDFLHERRQRVRVNGALSSWEPVKS 646
Query: 181 GL-------------------LISRAQLVLFADVAYFTLSLNKNYAPVYLRPTLDALPDW 303
G+ I+++ ++LFAD + + L+ L++L W
Sbjct: 647 GVPQGTILGPLLFLLYINELPAIAKSSVLLFADDIKIWRPIYSMSDRIVLQEDLNSLVAW 706
Query: 304 LDRWRLSAN 330
++ W L N
Sbjct: 707 MNGWSLEVN 715
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 39.1 bits (87), Expect = 0.069
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVRA 180
L+ +KAFD VW+ GL+ K+ +S+ + ++ + SF H+ V E SS + A
Sbjct: 182 LILFYDKKAFDNVWHTGLVIKMCKSKINLKIVQLIQSFLHNRSFQVCFENHLSSVRQITA 241
Query: 181 GL 186
G+
Sbjct: 242 GV 243
>UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 806
Score = 39.1 bits (87), Expect = 0.069
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVV-VEGDASSEIPVR 177
+LVFL++ KAFD V + ++ L + + +F+R V +D V V V G A+ ++ V+
Sbjct: 482 NLVFLDLAKAFDTVSHSSIVKALRRQQVPEKFVRIVQDLYDGAVTTVSVGGRATPQLVVK 541
Query: 178 AGL 186
G+
Sbjct: 542 RGV 544
>UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1092
Score = 38.3 bits (85), Expect = 0.12
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFL 99
S VFL++ +AFDRVW+EGL+ KL + + ++
Sbjct: 636 SAVFLDISEAFDRVWHEGLLLKLAKILPYNLYI 668
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 38.3 bits (85), Expect = 0.12
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASSEIPVRAGL 186
VF++M++AFDRVW++GLI K+ + + + D R +V V S +RAG+
Sbjct: 582 VFIDMQQAFDRVWHDGLISKVKKLFPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGV 641
>UniRef50_Q4VZW9 Cluster: Putative reverse transcriptase; n=8;
Culicidae|Rep: Putative reverse transcriptase - Culex
pipiens (House mosquito)
Length = 134
Score = 37.9 bits (84), Expect = 0.16
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFH--DHRVVVVVEGDASSEIPV 174
++ L++EKAFD VW++GLI+KL F +L K+ + + V + G AS +
Sbjct: 68 AMALLDVEKAFDNVWHDGLIHKL-YLYGFPMYLIKIIQHYLSERSFRVFLNGIASGLFNI 126
Query: 175 RAGL 186
AG+
Sbjct: 127 DAGV 130
>UniRef50_Q4EC81 Cluster: Pol protein; n=2; Wolbachia endosymbiont
of Drosophila ananassae|Rep: Pol protein - Wolbachia
endosymbiont of Drosophila ananassae
Length = 242
Score = 37.5 bits (83), Expect = 0.21
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQ 75
S +FL+ +AFDRVW+EGL+ KL++
Sbjct: 18 SAIFLDFSQAFDRVWHEGLLQKLSK 42
>UniRef50_UPI00015B43B0 Cluster: PREDICTED: similar to reverse
transcriptase homolog, partial; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to reverse
transcriptase homolog, partial - Nasonia vitripennis
Length = 1316
Score = 36.3 bits (80), Expect = 0.49
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 13 LNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASS 162
+++EKAFD VW +GL YKL + R +R + + +R V + S
Sbjct: 799 IDLEKAFDSVWLKGLFYKLIKKGFPRYLIRLIWTMMQNRNFYTVSNSSQS 848
>UniRef50_Q6UJ39 Cluster: Pol protein; n=1; Drosophila virilis|Rep:
Pol protein - Drosophila virilis (Fruit fly)
Length = 891
Score = 36.3 bits (80), Expect = 0.49
Identities = 12/20 (60%), Positives = 20/20 (100%)
Frame = +1
Query: 10 FLNMEKAFDRVWYEGLIYKL 69
FL++++AFDRVW++GL++KL
Sbjct: 655 FLDLQQAFDRVWHDGLLFKL 674
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 35.9 bits (79), Expect = 0.65
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFR-RFLRKVASFHDH-RVVVVVEGDASSEIPVR 177
L+F+++EKA+DRV E +++K + + R ++R + +D V +G S + P+
Sbjct: 29 LIFIDLEKAYDRVPRE-ILWKALEKKGVRVAYIRAIQDMYDRVSTSVRTQGGESDDFPIT 87
Query: 178 AGL 186
GL
Sbjct: 88 IGL 90
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:
ORF1 - Drosophila melanogaster (Fruit fly)
Length = 884
Score = 35.9 bits (79), Expect = 0.65
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHR 129
LV L++E AFD VW++GL++KL ++ V +F HR
Sbjct: 605 LVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHR 646
>UniRef50_Q0TVA8 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1366
Score = 35.9 bits (79), Expect = 0.65
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVR 177
SL+ L++ AFD V ++ L++ L + R + +R +ASF R + ++G S E +
Sbjct: 674 SLLLLDVSGAFDNVSHKRLLHNLRKRRVDEKTVRWIASFLSARRTRIAIDGFQSREYTIN 733
Query: 178 AGL 186
G+
Sbjct: 734 TGI 736
>UniRef50_Q6IH11 Cluster: HDC03720; n=1; Drosophila
melanogaster|Rep: HDC03720 - Drosophila melanogaster
(Fruit fly)
Length = 181
Score = 35.5 bits (78), Expect = 0.85
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 10 FLNMEKAFDRVWYEGLIYKL-TQSRAFRRFLRK 105
+ ++KAFD++W+EGL+YK+ R RR RK
Sbjct: 101 YSEVKKAFDKIWHEGLLYKIKAPVRGRRRSTRK 133
>UniRef50_Q86GH0 Cluster: Pol protein; n=1; Drosophila
americana|Rep: Pol protein - Drosophila americana (Fruit
fly)
Length = 1517
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQ 75
S VF+++ +AFDRVW+EGL+ KL +
Sbjct: 691 SAVFIDICEAFDRVWHEGLLSKLAK 715
>UniRef50_Q6IFU2 Cluster: Pol polyprotein; n=6; Schistosoma|Rep: Pol
polyprotein - Schistosoma mansoni (Blood fluke)
Length = 1227
Score = 34.7 bits (76), Expect = 1.5
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF-HDHRVVVVVEGDASSEIPVRA 180
+++L++ KAFD V ++ LI KL L SF D +V + S+ +PVR+
Sbjct: 844 VLYLDISKAFDMVNHQLLIGKLASYGVENPLLAWFDSFLSDRHQIVKINSSLSNSVPVRS 903
Query: 181 GLL 189
G++
Sbjct: 904 GVI 906
>UniRef50_Q4VZV8 Cluster: Putative reverse transcriptase; n=4;
Culicinae|Rep: Putative reverse transcriptase - Aedes
aegypti (Yellowfever mosquito)
Length = 134
Score = 34.7 bits (76), Expect = 1.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASF 117
++ L++EKA+D VW E +I+KL ++ ++ + SF
Sbjct: 69 MILLDVEKAYDSVWQEAIIFKLQKANCPLYLVKLIKSF 106
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 34.7 bits (76), Expect = 1.5
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 SLVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEG-DASSEIPVR 177
SLV L+ +AFDRV +I +L + + + ++ + +F +R + V G SS +P+
Sbjct: 571 SLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLF 630
Query: 178 AGLLISRAQLVLFADVAYFTLS 243
G+ V+ +A+ LS
Sbjct: 631 NGIPQGSPISVILFLIAFNKLS 652
>UniRef50_UPI0000E4874D Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 858
Score = 34.3 bits (75), Expect = 2.0
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 LNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVV-VVVEGDASSEIPVRAGL 186
++ KAFD+V ++ L++ L R + +F H+ VV+EG AS E+ V +G+
Sbjct: 666 MDFSKAFDKVGHQRLLHNLDYYGVRGESNRWITNFFHHQTQQVVLEGHASPEVDVDSGV 724
>UniRef50_A5V043 Cluster: Protein kinase; n=3; Chloroflexaceae|Rep:
Protein kinase - Roseiflexus sp. RS-1
Length = 502
Score = 33.9 bits (74), Expect = 2.6
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +1
Query: 214 FADVAYFTLSLNKNYAPVYLR--PTLDALPDWLDRWRLSANVA*TQAMISGRFPSYPSVS 387
+ VA F +L AP +R P A+P + S VA T A PS V+
Sbjct: 286 YKSVAEFRRALLPERAPAQVRVVPATQAIPAQVAASAPSQPVATTAAPSGSVAPSSKRVT 345
Query: 388 PEGRRPAAVAAGQIPRRYPQSTPLSRRXRIYY*NN*IFVKI 510
P P A P PQ+ P +RR R + N +FV I
Sbjct: 346 PVVPPPPASVPAAKPGAQPQAPPKARRSRGF--GNVVFVLI 384
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 33.9 bits (74), Expect = 2.6
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKL 69
+FL++ +AFDRVW +GL++K+
Sbjct: 577 IFLDVAQAFDRVWLDGLLFKI 597
>UniRef50_Q4P0U8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1276
Score = 33.5 bits (73), Expect = 3.4
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LVFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKV--ASFHDHRVVVVVEGDASSEIPVR 177
L+F++ EKA+DRV ++ +++L + +R A + + ++ V+V G AS PVR
Sbjct: 543 LLFIDQEKAYDRVDHK-FLWRLLKQVGLPEPIRHAIKALYANVKLKVMVNGFASKPFPVR 601
Query: 178 AGL 186
+G+
Sbjct: 602 SGV 604
>UniRef50_Q0K451 Cluster: Transcriptional regulator, LysR-family;
n=1; Ralstonia eutropha H16|Rep: Transcriptional
regulator, LysR-family - Ralstonia eutropha (strain ATCC
17699 / H16 / DSM 428 / Stanier 337)(Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier337))
Length = 296
Score = 33.1 bits (72), Expect = 4.6
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = -3
Query: 286 LALDAGRRGRSFYSVRA*STPRPRTTLAAPG*SASLRAP 170
LAL AGR G S +S R ST R R T A+PG AS AP
Sbjct: 135 LALRAGRPGDSAFSARCLSTYR-RVTCASPGYLASHGAP 172
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 33.1 bits (72), Expect = 4.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 7 VFLNMEKAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDASSEIPVRAGL 186
+FL++ +AFDRVW+ GL K+ Q+ F + R V S+E V AG+
Sbjct: 581 LFLDIREAFDRVWHIGLQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGV 640
>UniRef50_UPI000155CC10 Cluster: PREDICTED: similar to ribosomal
protein S10; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein S10 -
Ornithorhynchus anatinus
Length = 1202
Score = 32.7 bits (71), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -3
Query: 484 NNIFVIDDLEAWIEGNAEVFVLRQPPQVFSLQAKPT----GRKGI 362
N+ V+ DL+ W+ GN + + PQ+ SL K G+KGI
Sbjct: 1129 NHTEVVVDLQGWVTGNGKGIIYLTDPQIHSLDPKEVTSNFGKKGI 1173
>UniRef50_UPI0000F0A504 Cluster: hypothetical protein; n=1;
uncultured marine organism|Rep: hypothetical protein -
uncultured marine organism
Length = 117
Score = 32.3 bits (70), Expect = 8.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 25 KAFDRVWYEGLIYKLTQSRAFRRFLRKVASFHDHRVVVVVEGDA 156
K+ D VW E L +L+ + R + KV + HR+ +V E D+
Sbjct: 29 KSLDEVWSEDLYSRLSAAGLIRHVISKVWNKEQHRISMVFEYDS 72
>UniRef50_UPI000155BCAC Cluster: PREDICTED: similar to ZNF235
protein; n=3; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to ZNF235 protein - Ornithorhynchus anatinus
Length = 1063
Score = 32.3 bits (70), Expect = 8.0
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 343 GFKRRWPTTSTGPASRAKHLALDAGRRGRSFYSVRA*STPRPRTTLAAP 197
G ++ P TGP SR + D RG S T RPRT A P
Sbjct: 536 GARKEPPRLETGPPSRRSRRSADTADRGTGKSSASPRVTSRPRTRRARP 584
>UniRef50_UPI000049922F Cluster: apyrase; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: apyrase - Entamoeba histolytica HM-1:IMSS
Length = 367
Score = 32.3 bits (70), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 550 QVQISITINNRGNLFLQIFNCFNNIFVIDD 461
Q Q + N RGN ++ FNN++V DD
Sbjct: 113 QTQTQLNYNGRGNELSEVIQYFNNLYVFDD 142
>UniRef50_Q745F5 Cluster: Putative uncharacterized protein; n=2;
Mycobacterium|Rep: Putative uncharacterized protein -
Mycobacterium paratuberculosis
Length = 534
Score = 32.3 bits (70), Expect = 8.0
Identities = 24/76 (31%), Positives = 30/76 (39%)
Frame = -3
Query: 334 RRWPTTSTGPASRAKHLALDAGRRGRSFYSVRA*STPRPRTTLAAPG*SASLRAPESQRK 155
R PT G R + AL+ RG S T PG A+ R + +R
Sbjct: 231 RAGPTARLGCGVRHR-AALEGHPRGSRLDDHLRLSAAGDHLTQPVPGVDAARRRGDPERD 289
Query: 154 RLPQPLPQHDDHGTKP 107
RL + Q DDHG P
Sbjct: 290 RLSRRALQRDDHGAHP 305
>UniRef50_Q3K6E1 Cluster: Predicted periplasmic ligand-binding
sensor protein; n=17; Pseudomonas|Rep: Predicted
periplasmic ligand-binding sensor protein - Pseudomonas
fluorescens (strain PfO-1)
Length = 252
Score = 32.3 bits (70), Expect = 8.0
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -3
Query: 283 ALDAGRRGRSFYSVRA*STPRPRTTLAAPG*SASLRAPESQRKRLPQPLPQHDDHGTKPL 104
AL A G S+ S+PRP T +AP + R P Q + P PQ + P
Sbjct: 88 ALPASSGGGFLSSIFGGSSPRPAPTQSAPASTGGWREPAPQ-QNFGAPAPQQNFGAPPPG 146
Query: 103 FGEIF*RPSTG 71
+G+ P+ G
Sbjct: 147 YGQQQAAPAAG 157
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,391,504
Number of Sequences: 1657284
Number of extensions: 11906718
Number of successful extensions: 37944
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 36316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37921
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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