Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40036
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.80 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   4.3  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   4.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   4.3  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   7.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 287 EIKKVNLEAWQDSVEGPDILARTNKWIKDK 376
           E  K N   WQDS E P      N  I++K
Sbjct: 107 EKAKFNESKWQDSGESPGFTTERNWEIREK 136


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 760 VP*LVTFSLEGSPNIEHIDI 701
           VP ++T +  G+ NI++ID+
Sbjct: 190 VPQMITLTFNGAVNIDNIDL 209


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = -3

Query: 594 RSAAFVVKPILMVIEDKMIKYIMSFLKTINSQERFVRSNSNEYNTETQSCVH 439
           R   F ++P   ++  +   ++ S    I    ++VR  +  Y+T    C+H
Sbjct: 311 RHTGFSLRPAAGLLTAR--DFLASLAFRIFQSTQYVRHKNTPYHTPEPDCIH 360


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 103 VRHNCSLNRLVAVGPRR--EPGR 41
           +RHN SLN+     PR   +PG+
Sbjct: 131 IRHNLSLNKCFVKVPRHYDDPGK 153


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 360 LLVRARMSGPSTESCHASKLTFFISSH 280
           ++V  +M GPS E C   ++   + +H
Sbjct: 99  IVVNRKMPGPSVEVCLGDEVIIDVVNH 125


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 301 NLLYFLARHDRVAIR--SVSNTSLC-SCFISVLSQINLASETLRS 176
           +L+YF+     ++I   +VS  +   +C I + +Q  + S+TLR+
Sbjct: 165 DLVYFILAFACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRN 209


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 543  FCLQSPLISVLRRRPQSVSY*RYHVVKWL*YPSGY 647
            FC+ +  I      PQ  +  +Y V+ ++  PS Y
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMY 1016



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 305  LEAWQDSVEGPDILARTNKWIKDKVII 385
            +EA QD+V  P      N W  D  +I
Sbjct: 1155 MEAPQDNVSQPSDEVMENSWFYDGPLI 1181


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 543  FCLQSPLISVLRRRPQSVSY*RYHVVKWL*YPSGY 647
            FC+ +  I      PQ  +  +Y V+ ++  PS Y
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMY 1016



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 305  LEAWQDSVEGPDILARTNKWIKDKVII 385
            +EA QD+V  P      N W  D  +I
Sbjct: 1155 MEAPQDNVSQPSDEVMENSWFYDGPLI 1181


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 671 ASENGAFPGLD 703
           ASE G FPGLD
Sbjct: 118 ASEVGRFPGLD 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,452
Number of Sequences: 336
Number of extensions: 4994
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)