Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   2.1  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.8  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 627 SSVLGAKDPDQVASMAKQAGEFF 695
           S V  A DP+++ +M   A EFF
Sbjct: 110 SFVAAANDPEKMKNMTSSAIEFF 132


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +2

Query: 419 KHFSSTVASRAPTKATPWTQNHQLRLLGLTHRYGSKNSDRSS 544
           +H +S +    PT+   W QNH+ +     H  G  +   ++
Sbjct: 71  EHLASIIRL-TPTQVKIWFQNHRYKTKRAQHEKGMHDQQNNN 111


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 418 QTFFVNGGVTGPNKSDTLDTESSAPSP 498
           Q+  V+G +T P K+        AP+P
Sbjct: 28  QSIIVSGSITQPTKTVIQSKRPLAPAP 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,730
Number of Sequences: 336
Number of extensions: 3999
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)