Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20090
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    31   0.007
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.57 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.57 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.75 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.0  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   5.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +3

Query: 276 AQQIPRDDPCDFCFCFRSDIICLQQSCPPPI--HGCHEEPIQGFCC 407
           AQ    D+PC  CFC   +  C    CP          E + G CC
Sbjct: 684 AQWTSSDNPCTTCFCENGNNKCFTMECPQVTCPDNMKLEKVPGECC 729


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 217 QHSLALRHNRSRHLEGNYFLLDLRF 143
           Q +  LRHN +RHL  N   L L F
Sbjct: 392 QFARLLRHNFNRHLNSNRAPLGLHF 416


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 217 QHSLALRHNRSRHLEGNYFLLDLRF 143
           Q +  LRHN +RHL  N   L L F
Sbjct: 399 QFARLLRHNFNRHLNSNRAPLGLHF 423


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 449 CNHHDYNNNNHITSSFPYPPYKGAAQRRGCQIKGHTYKVGEVV 577
           C H  Y N  +I+   P  PY      R   +  H  +VG V+
Sbjct: 371 CTH--YQNPEYISVVNPESPYPQIGSERATPVGYHQNEVGGVI 411


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 19  TTKTADISEQALEKFTKPDTKPSESP 96
           TT T   +    +  TKP TKP+  P
Sbjct: 164 TTSTTTRTTLTTKFTTKPSTKPTNKP 189


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 13   TSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEE 162
            T+T +T           T+P T    +  T +P P      +D+ + P E
Sbjct: 1055 TTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPSQPCE 1104


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 616 GDGQMKCDPKACTPEPMLRQ 675
           G G ++ DP +C P   LRQ
Sbjct: 39  GGGAVQPDPGSCDPSVGLRQ 58


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 70  PDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGE 204
           P  KP E    ++      E       G EES   P   +GY  E
Sbjct: 105 PKAKPGERKFIKVTTKAPLECMCRPCTGVEESAVIPQEIAGYADE 149


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 348 QSCPPPIHGCHEEP 389
           Q  PPP    HEEP
Sbjct: 18  QEVPPPFGYYHEEP 31


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 431 DGDYTQCNHHDYNNNNHITSSFPYPP 508
           D D  Q   H+Y +NN +  S    P
Sbjct: 28  DCDKNQNTEHNYTHNNEMYHSVKEEP 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,364
Number of Sequences: 336
Number of extensions: 3680
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)