Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0206.Seq
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.5  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 270 DSALVCDQPPC 238
           +S  +CD PPC
Sbjct: 5   ESKAICDNPPC 15


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 146 PVRIQGAHTSGPGQ*CSRFYVQELEAAL 229
           PVRI G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 132 HPAPSHSSLNTPTL 91
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 246 AGHKPVPNHGVPDVLLP 296
           A + P PN GVP   +P
Sbjct: 174 ARYHPYPNFGVPPAGIP 190


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 NQCRIMGYRTCCCPN 300
           +Q R  G  TC CPN
Sbjct: 281 SQRRYTGRATCDCPN 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,790
Number of Sequences: 336
Number of extensions: 2085
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)