Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30198.Seq
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.95 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.9  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 170 RFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIR 75
           R++K VL +SG++   +    T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 721 RKRPATDXPFPNSCAP 768
           RKRP +  P+P  C P
Sbjct: 20  RKRPHSPEPYPPRCPP 35


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 269 ISKALIAFYQKYVDEASKKEIKDI 340
           I K +IAFY K +   +  EIK I
Sbjct: 126 IVKPIIAFYYKPIKTLNGHEIKFI 149


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 50  SEYLDGLDGLTSCLLH 3
           S Y+DG+  +T C +H
Sbjct: 143 SPYMDGVPFVTQCPIH 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,652
Number of Sequences: 336
Number of extensions: 3766
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)