Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 261 LKLRSGLTFNPYL*TIVGEPTMLNGDLLERQDTYWVVKLR**KKKNS 401
           L+L     FN Y+          N +L ERQ   W    R   KKNS
Sbjct: 256 LELEKEFLFNAYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKKNS 302


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -3

Query: 206 NQIVNVC*SAIGGYSHNRVQCA*CEFF 126
           NQ+  VC     G+      C  C+ F
Sbjct: 2   NQLCKVCGEPAAGFHFGAFTCEGCKSF 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,068
Number of Sequences: 336
Number of extensions: 1616
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)