Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0050.Seq
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    30   0.026
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.56 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.56 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.56 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.56 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.56 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.56 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.56 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.7  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   4.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   5.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   6.9  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 0.026
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 179 DDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTL 355
           +D D    ++       D     D E+ HQ+ PKP   +PIY PVS  +  + L +  L
Sbjct: 6   EDQDLVQDLIEEPATFSDAVLSSDEELFHQKCPKP---APIYSPVSKPVSFESLPNRRL 61


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 99  LTSPLSVSTSPPGKPATSTASQNLSSPASST 129


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS AS NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTASQNLSSPASST 173


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LTS-LTLTQTASG-PETSPASDNLSVPSSDT 424
           LTS L+++ +  G P TS  S NLS P+S T
Sbjct: 143 LTSPLSVSTSPPGKPATSTTSQNLSSPASST 173


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 PELSPIYLPVSPVMPVQPLTSLTLTQTAS 370
           P LSP+ + + P +P     +L   QTA+
Sbjct: 116 PTLSPVGVALPPTLPAAAAAALLPPQTAA 144


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 263 HQRWPKPPELSPIYLPVSPVMPV 331
           H   P PP   PIY P     PV
Sbjct: 24  HSPEPYPPRCPPIYEPSCQYSPV 46


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 259 DFIIALAGHVLQDLLNVEDGDAFVSVID 176
           D  + L  H++   + V D D  V VID
Sbjct: 45  DLPVDLCTHIVYSFIGVNDADWSVLVID 72


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 19/83 (22%), Positives = 32/83 (38%)
 Frame = +2

Query: 167 WDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 346
           W+ +D  D    I N      D    G  ++   + PKP +++  ++   P    + ++S
Sbjct: 289 WNLLDGLDAVAFIDN-----HDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSS 343

Query: 347 LTLTQTASGPETSPASDNLSVPS 415
                   GP    A  NL  PS
Sbjct: 344 FAFDNNDQGPPQDDAG-NLISPS 365


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 19/83 (22%), Positives = 32/83 (38%)
 Frame = +2

Query: 167 WDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 346
           W+ +D  D    I N      D    G  ++   + PKP +++  ++   P    + ++S
Sbjct: 290 WNLLDGLDAVAFIDN-----HDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSS 344

Query: 347 LTLTQTASGPETSPASDNLSVPS 415
                   GP    A  NL  PS
Sbjct: 345 FAFDNNDQGPPQDDAG-NLISPS 366


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 19/83 (22%), Positives = 32/83 (38%)
 Frame = +2

Query: 167 WDYVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 346
           W+ +D  D    I N      D    G  ++   + PKP +++  ++   P    + ++S
Sbjct: 290 WNLLDGLDAVAFIDN-----HDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRLMSS 344

Query: 347 LTLTQTASGPETSPASDNLSVPS 415
                   GP    A  NL  PS
Sbjct: 345 FAFDNNDQGPPQDGAG-NLISPS 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,210
Number of Sequences: 336
Number of extensions: 3746
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)