Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0047.Seq
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   4.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 478 LSPAGVIAKRPHRSPFPTVAXLNGEWQIVSV 570
           LSP+G    +   SP+P    L+G   + S+
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSI 88


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 736 GSPRSLIVDSCSKLEQHSTXSRSILLIYKGF 644
           G+P +++   C+KL   S    +   + KGF
Sbjct: 34  GTPLAMLAAQCNKLSNKSPPPLADAAVGKGF 64


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 LNKLECSKRAKNVLEYFVHGIIEYDLGSI 304
           L+ L+ ++  KN+LE      + Y+LG +
Sbjct: 387 LSLLQVAQIFKNLLENHYEEFVRYELGEL 415


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 231 SAQSGLKMCLNIS 269
           S+Q G K CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,793
Number of Sequences: 336
Number of extensions: 4159
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)