Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0022.Seq
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   9.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 353 HAHHEKSAYLSLAKGNPVPIPEPGSGTVSI 442
           H H    A + + +G     P+PGS   S+
Sbjct: 25  HQHQHYGAAVQVPQGGGAVQPDPGSCDPSV 54


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 788 PLFRK--LRIQFADFXYLHXFYRLEALHXGDLLRIWVR 681
           P+++   L I FADF YL   +    L    LL ++ R
Sbjct: 72  PIYKNTYLIILFADFAYLETTWICTLLKKDKLLELFKR 109


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 788 PLFRK--LRIQFADFXYLHXFYRLEALHXGDLLRIWVR 681
           P+++   L I FADF YL   +    L    LL ++ R
Sbjct: 90  PIYKNTYLIILFADFAYLETTWICTLLKKDKLLELFKR 127


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 273 GKQSGGFRFYFRYGI 229
           G  S GFRFY   GI
Sbjct: 518 GLNSQGFRFYIACGI 532


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 273 GKQSGGFRFYFRYGI 229
           G  S GFRFY   GI
Sbjct: 518 GLNSHGFRFYIACGI 532


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,021
Number of Sequences: 336
Number of extensions: 4070
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)