Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0021.Seq
         (421 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    24   0.69 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   4.9  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    20   8.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   8.5  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 171 LKFDNFRIYNITVLHNNKTDIMCREGKHTALYY 73
           L+++++R+Y ++VL +N    +      T LY+
Sbjct: 144 LRYEHYRLYQLSVLIDNNMSYIIIVSFATNLYF 176


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 114 RFYCYVKP*YYKYENYQISNF 176
           R+YC       K E Y+ SNF
Sbjct: 292 RWYCQTATMEEKQELYEFSNF 312


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
          protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 43 PCLCPTIDRQFS 8
          P  CP  DR+FS
Sbjct: 49 PFRCPVCDRRFS 60


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 43  PCLCPTIDRQFS 8
           P  CP  DR+FS
Sbjct: 305 PFRCPVCDRRFS 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,041
Number of Sequences: 336
Number of extensions: 1773
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)