Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0016
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   0.41 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.0  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   8.7  

>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 336 NNHGKTIINSMFCFSVRLQLTRA 268
           + HG TI+NSM  +  R  L RA
Sbjct: 85  DKHGFTILNSMHKYQPRFHLVRA 107


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  WTAASTVNET*ILINCYCSPKLLRLKGLLSF 117
           W+A   VN   I   CY + +  R+ GL++F
Sbjct: 275 WSAFFIVNVLYICNQCYNTVEESRIFGLVTF 305


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 422 LILNSVKITMKHFNKYKLKPCDQIKTVKRRDNLA 523
           +++ S K   K  N+     C+Q K+V+   N+A
Sbjct: 191 ILIRSFKSRYKDLNQKLETACEQSKSVEELMNIA 224


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 326 VKQLLIQCFVLVCV 285
           V+ LLIQC++ V +
Sbjct: 43  VEHLLIQCYIAVSI 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,275
Number of Sequences: 336
Number of extensions: 2379
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)