Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C05f
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.49 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.49 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   1.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   1.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   3.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +2

Query: 68  PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLPVPNRHEGDERRRV 235
           PSP T  SV S SVS A PY L++      L    A + K  P P+ H    R  V
Sbjct: 702 PSPST--SVASPSVSVASPYMLQS-----PLTPHEAFDVKLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +2

Query: 68  PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLPVPNRHEGDERRRV 235
           PSP T  SV S SVS A PY L++      L    A + K  P P+ H    R  V
Sbjct: 594 PSPST--SVASPSVSVASPYMLQS-----PLTPHEAFDVKLPPPPHPHHQPPRNPV 642


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 238 SNTSSLVSLVPIRHGKTFIIKRKLAKKLKQ 149
           SNTSS++SL  +  G+T    ++L +  K+
Sbjct: 242 SNTSSMLSLNCLNTGRTNFTNKQLTELEKE 271


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 387 NIFKSLLLIFSNFIWIT 337
           N++  LLL+F  ++WI+
Sbjct: 121 NLYMVLLLLFDAYLWIS 137


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 238 SNTSSLVSLVPIRHGKTFIIKRKLAKKLKQ 149
           SNTSS++SL  +  G+T    ++L +  K+
Sbjct: 31  SNTSSMLSLNCLNTGRTNFTNKQLTELEKE 60


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 238 SNTSSLVSLVPIRHGKTFIIKRKLAKKLKQ 149
           SNTSS++SL  +  G+T    ++L +  K+
Sbjct: 31  SNTSSMLSLNCLNTGRTNFTNKQLTELEKE 60


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 86  LSVISNSVSCAHPY--PLRNGSVLFQLFGQFALNNKRLPV 199
           +S +S SVS A     PL    + F LFG F LN   +P+
Sbjct: 547 ISCVSRSVSMALSIGPPL---VIPFLLFGGFFLNVSSIPI 583


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 86  LSVISNSVSCAHPY--PLRNGSVLFQLFGQFALNNKRLPV 199
           +S +S SVS A     PL    + F LFG F LN   +P+
Sbjct: 547 ISCVSRSVSMALSIGPPL---VIPFLLFGGFFLNVSSIPI 583


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,398
Number of Sequences: 336
Number of extensions: 1713
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)