Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A06f
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   0.84 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   7.8  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 293 PSISIMYVRHLRKLLNMFTNIHQIFKDVLGW 385
           P     +V  +RKL  +   +  +F D+ GW
Sbjct: 208 PKNCASFVIEVRKLSRLLGEMVGLFNDIFGW 238


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 207 LLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLC 311
           ++Y +T+       +L  L +G   +CL  + +LC
Sbjct: 240 IMYEKTNVTFVHLAVLNILRVGKNFVCLLSLIILC 274


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 238 FGCLSVRLY 212
           FGCLS RL+
Sbjct: 271 FGCLSTRLF 279


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 289 KHKLVVPMSRLHKIRN 242
           ++KL+  +S+LHK+ N
Sbjct: 101 QNKLIEVISKLHKLDN 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,777
Number of Sequences: 336
Number of extensions: 2138
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)