Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0023.Seq
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.33 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   3.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   3.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   3.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   9.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   9.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 198 HREGLPWHLPSARCLHPKGESVEEAPFRDLEVDG 97
           HRE + W + + R ++ +GES   + +R L  +G
Sbjct: 290 HREDVRWVMIALRQMYDRGESKGSSCYRLLSRNG 323


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 137 LSPFGCKHRAEGRCHGRPSRCP 202
           L P+    R   RCHG    CP
Sbjct: 336 LWPYTMYFRMPHRCHGNLQSCP 357


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 155 CIRKVKVLKRPRFEISKLME 96
           C+R     KRP+FE S   E
Sbjct: 192 CLRTCSSAKRPKFENSSCDE 211


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 188 PSRCPWQWSQESTCSPPP*VQSCDVA 265
           P+R P++W ++++    P  +  D A
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFA 144


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 188 PSRCPWQWSQESTCSPPP*VQSCDVA 265
           P+R P++W ++++    P  +  D A
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFA 144


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 183 PWHLPSARCLH 151
           P+H P   C+H
Sbjct: 350 PYHTPEPDCIH 360


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 309 LRSEQSERKCVKSLHATSQ 253
           LRS    RK   SL ATS+
Sbjct: 63  LRSRPGHRKTDNSLSATSK 81


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 263  RRHNSELREVVNKLIPDSIA 204
            R H S++  V + +IPD +A
Sbjct: 1070 RHHLSKMHFVKDGVIPDPVA 1089


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,047
Number of Sequences: 336
Number of extensions: 1565
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)