Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0014.Seq
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.37 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   0.49 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 63  YFDTYYFNIKCYYYILLEFSIKLRHYQQNICILH 164
           YF    F + C YY    F I   H    +CI H
Sbjct: 135 YFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYH 168



 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +3

Query: 63  YFDTYYFNIKCYYYILLEFSIKLRHYQQNICILH 164
           YF   +  + C YY    F I   H    +CI +
Sbjct: 102 YFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYY 135


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 30  CVKLTNKVQPQYFDTYYFNIKCYYYILLEFSIKL 131
           C ++ ++V+ +Y  TY+ N   + +   EFS+ L
Sbjct: 335 CSQIPSEVEDKY-TTYFLNTYPHLFNFFEFSVPL 367


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc
          finger protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 9  MCIFGVQCVKLTNKVQPQYFD 71
          + +   QC KL+NK  P   D
Sbjct: 37 LAMLAAQCNKLSNKSPPPLAD 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,868
Number of Sequences: 336
Number of extensions: 1269
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)